Thanks a lot Mara!!! Many regards,
On Jun 22, 4:24 pm, Mara Jochum <[email protected]> wrote: > Dear Sacha, > > I guess your question boils down to this: > > > Until now everything seems to work fine, although when i check cg.gro > > file using VMD ijust get unconnected dots instead of chains with 10 > > beads. Is it normal? > > This is normal. VMD draws bonds according to a standard cutoff. So if you > don't see them in your cg.gro, this just means that the distances between > your CG beads is larger than that value. > > If you still want to see the bonds, you can either: > > (1) Create and load an additional file (PSF) which contains the connectivity > > or > > (2) Use the "dynamic bonds" representation as described > below:http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/2797.html > > Hope this helps, > > - Mara -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
