Hi Marc, >[ 5%] Built target votca-csg_manpage >make[2]: *** No rule to make target `help2t2t', needed by > `scripts/help2t2t'. Stop.
I guess this is a problem with your cmake version, there was a bug in cmake's depency solver in version 2.8.0. Just for the records, which version of cmake do you have installed? You can workaround that problem by adding -DTXT2TAGS_EXECUTABLE="" to your build.sh command. Cheers, Christoph Am 21. Oktober 2011 01:55 schrieb Marc Segovia <[email protected]>: > Dear all > > I follow the installation procedure recommend on webpage, with a few > modifications on last line. > > prefix=/home/marc/votca > mkdir -p ${prefix}/src > cd ${prefix}/src > wget http://votca.googlecode.com/hg/build.sh > chmod +x build.sh > sudo ./build.sh --prefix ${prefix} -DEXTERNAL_BOOST=OFF > -DWITH_SQLITE3=OFF gromacs tools csg > > > After gromacs and tools do fine , csg have problems, as below, any suggestion > ? > Is an linux mint on 64 bit 4core machine. > Thanking your help > > Marc > > Working on csg > Source dir (csg) is already there - skipping checkout > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file .hg/hgrc from untrusted user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file .hg/hgrc from untrusted user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file .hg/hgrc from untrusted user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file .hg/hgrc from untrusted user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > Not trusting file /home/marc/votca/src/csg/.hg/hgrc from untrusted > user marc, group marc > cmake -DCMAKE_INSTALL_PREFIX=/home/marc/votca -DEXTERNAL_BOOST=OFF > -DWITH_SQLITE3=OFF -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON . > -- The C compiler identification is GNU > -- The CXX compiler identification is GNU > -- Check for working C compiler: /usr/bin/gcc > -- Check for working C compiler: /usr/bin/gcc -- works > -- Detecting C compiler ABI info > -- Detecting C compiler ABI info - done > -- Check for working CXX compiler: /usr/bin/c++ > -- Check for working CXX compiler: /usr/bin/c++ -- works > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- Found TXT2TAGS: /usr/bin/txt2tags > -- checking for module 'libvotca_boost' > -- found libvotca_boost, version > -- Found VOTCA_BOOST: /home/marc/votca/lib64/libvotca_boost.so > -- checking for module 'libvotca_tools' > -- found libvotca_tools, version > -- Found VOTCA_TOOLS: /home/marc/votca/lib64/libvotca_tools.so > -- Looking for VotcaToolsFromC in /home/marc/votca/lib64/libvotca_tools.so; > -- Looking for VotcaToolsFromC in > /home/marc/votca/lib64/libvotca_tools.so; - found > -- Looking for assert.h > -- Looking for assert.h - found > -- Looking for C++ include algorithm > -- Looking for C++ include algorithm - found > -- Looking for C++ include fstream > -- Looking for C++ include fstream - found > -- Looking for C++ include iomanip > -- Looking for C++ include iomanip - found > -- Looking for C++ include iostream > -- Looking for C++ include iostream - found > -- Looking for C++ include list > -- Looking for C++ include list - found > -- Looking for C++ include map > -- Looking for C++ include map - found > -- Looking for C++ include numeric > -- Looking for C++ include numeric - found > -- Looking for C++ include sstream > -- Looking for C++ include sstream - found > -- Looking for C++ include stdexcept > -- Looking for C++ include stdexcept - found > -- Looking for C++ include string > -- Looking for C++ include string - found > -- Looking for C++ include vector > -- Looking for C++ include vector - found > -- Looking for C++ include cstdlib > -- Looking for C++ include cstdlib - found > -- Looking for sqrt in m > -- Looking for sqrt in m - found > -- checking for module 'libgmx' > -- found libgmx, version 4.5.3 > -- Looking for GromacsVersion in /usr/lib/libgmx.so; > -- Looking for GromacsVersion in /usr/lib/libgmx.so; - found > -- Looking for init_mtop in /usr/lib/libgmx.so; > -- Looking for init_mtop in /usr/lib/libgmx.so; - found > -- Looking for output_env_init in /usr/lib/libgmx.so; > -- Looking for output_env_init in /usr/lib/libgmx.so; - found > -- Looking for init_domdec_vsites in /usr/lib/libgmx.so; > -- Looking for init_domdec_vsites in /usr/lib/libgmx.so; - not found > -- Found GROMACS: /usr/lib/libgmx.so > -- Found Doxygen: /usr/bin/doxygen > -- Configuring done > -- Generating done > -- Build files have been written to: /home/marc/votca/src/csg > cleaning csg > buidling csg > Scanning dependencies of target changelog > [ 1%] [ 1%] Building CXX object > src/libcsg/CMakeFiles/gmx_print_version.dir/modules/io/gmx_print_version.cc.o > Building CHANGELOG using txt2tags > [ 2%] Built target changelog > Current revision is 75b296de50f4 > [ 2%] Built target help2t2t > Current revision is 75b296de50f4 > Current revision is 75b296de50f4 > Linking CXX executable gmx_print_version > [ 2%] Built target hgversion > [ 2%] Built target csg_call > [ 2%] Building votca-csg manpage > Current revision is 75b296de50f4 > [ 2%] Built target gmx_print_version > [ 3%] [ 3%] Built target csg_include_links > Built target csg_inverse > make[2]: *** No rule to make target `help2t2t', needed by > `scripts/help2t2t'. Stop. > make[1]: *** [scripts/CMakeFiles/csg_call_manpage.dir/all] Error 2 > make[1]: *** Waiting for unfinished jobs.... > [ 5%] Built target votca-csg_manpage > make[2]: *** No rule to make target `help2t2t', needed by > `scripts/help2t2t'. Stop. > make[1]: *** [scripts/CMakeFiles/csg_inverse_manpage.dir/all] Error 2 > [ 6%] Generating gmx_libs_version.h > Current revision is 75b296de50f4 > [ 6%] Built target multi_g_rdf > [ 9%] [ 10%] [ 9%] [ 11%] [ 12%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/trajectorywriter.cc.o > Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o > Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/triclinicbox.cc.o > Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o > Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o > [ 14%] [ 15%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/topologyreader.cc.o > Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/trajectoryreader.cc.o > [ 16%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o > [ 18%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o > [ 19%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o > [ 20%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o > [ 22%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o > [ 23%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o > [ 24%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o > [ 25%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/topologymap.cc.o > [ 27%] [ 28%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o > Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o > [ 29%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o > [ 31%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o > [ 32%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o > [ 33%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o > [ 35%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmx_version_check.cc.o > [ 36%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o > [ 37%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o > [ 38%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmx_version.cc.o > [ 40%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o > [ 41%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o > [ 42%] [ 44%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbtopologyreader.cc.o > Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/grotopologyreader.cc.o > [ 45%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o > [ 46%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o > [ 48%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/lammpsreader.cc.o > [ 49%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/esptopologyreader.cc.o > /home/marc/votca/src/csg/src/libcsg/modules/io/xyzwriter.cc: In member > function ‘virtual void > votca::csg::XYZWriter::Write(votca::csg::Topology*)’: > /home/marc/votca/src/csg/src/libcsg/modules/io/xyzwriter.cc:40:46: > warning: format ‘%d’ expects type ‘int’, but argument 3 has type > ‘std::vector<votca::csg::Bead*, std::allocator<votca::csg::Bead*> >>::size_type’ > [ 50%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/esptrajectoryreader.cc.o > [ 51%] Building CXX object > src/libcsg/CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o > Linking CXX shared library libvotca_csg.so > [ 51%] Built target votca_csg > make: *** [all] Error 2 > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/votca?hl=en. > > -- Christoph Junghans Votca Core Developer Web: http://www.votca.org -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
