Hi Chang, This sounds like you do not have write permission to the folder. In which folder did you install tutorials? Make sure you have write permissions to that folder.
Cheers, Sikandar On Wed, Aug 12, 2015 at 10:25 AM, Chang Woon Jang <[email protected]> wrote: > Dear Sikandar Mashayak, > > > Thank you very much for your advise. That is a great solution. I have > another question. > > When I run ./run in csg-tutorials/propane/atomistic/ with superuser mode > (su), it works. However, when I run the same thing without superuser, the > following error occured. > > Is there any knowing solution? I very appreciate your help. > > > ------------------------------------------------------- > Program grompp, VERSION 4.6.8-dev-20150706-eea54d0 > Source code file: /home/chang/VOTCA/src/gromacs/src/gmxlib/futil.c, line: > 542 > > File input/output error: > mdout.mdp > For more information and tips for troubleshooting, please check the GROMACS > website at http://www.gromacs.org/Documentation/Errors > ------------------------------------------------------- > > > Best regards, > Chang > > > On Wed, Aug 12, 2015 at 12:03 PM, Sikandar Mashayak <[email protected]> > wrote: > >> Hi Chang, >> >> The error says the cmake could not find GROMACS. Is gromacs installed on >> the machine? If yes, then make sure it is in the PATH. Or you can also try >> building gromacs with tools and csg by running >> >> ./build.sh --prefix ${prefix} -ud gromacs tools csg >> >> I hope it helps. >> >> Cheers, >> Sikandar >> >> On Wed, Aug 12, 2015 at 9:11 AM, CHANG <[email protected]> wrote: >> >>> Dear VOTCA users, >>> >>> I followed the votca installation process. There is an error occured >>> duing ./build.sh --prefix ${prefix} -ud tools csg >>> >>> >>> 1. su >>> 2. prefix=/home/chang/VOTCA >>> 3. mkdir -p ${prefix}/src >>> 4. cd ${prefix}/src >>> 5. wget http://votca.googlecode.com/hg/build.sh >>> 6. chmod +x build.sh >>> 7. ./build.sh --prefix ${prefix} -ud tools csg >>> >>> The following error ocuured. Would you please let me know what the >>> problem is? >>> Do I need to install gromacs first? >>> >>> >>> >>> -- Looking for sqrt in m - found >>> -- checking for module 'libgmx_d' >>> -- package 'libgmx_d' not found >>> -- Could NOT find GROMACS (missing: GROMACS_LIBRARY >>> GROMACS_INCLUDE_DIR) >>> -- checking for module 'libgmx' >>> -- package 'libgmx' not found >>> -- Could NOT find GROMACS (missing: GROMACS_LIBRARY >>> GROMACS_INCLUDE_DIR) >>> -- checking for module 'libgromacs_d' >>> -- package 'libgromacs_d' not found >>> -- Could NOT find GROMACS (missing: GROMACS_LIBRARY >>> GROMACS_INCLUDE_DIR) >>> -- checking for module 'libgromacs' >>> -- package 'libgromacs' not found >>> -- Could NOT find GROMACS (missing: GROMACS_LIBRARY >>> GROMACS_INCLUDE_DIR) >>> CMake Error at src/libcsg/CMakeLists.txt:20 (message): >>> gromacs not found, make sure you have installed at least the >>> gromacs-4.0.7 >>> and it's dev package. If the gromacs module was not found above, make >>> sure >>> you have sourced GMXRC or set PKG_CONFIG_PATH yourself. (use option >>> -DGROMACS_PKG_OVERWRITE=libgmx/_d for gromacs<5.0 and >>> -DGROMACS_PKG_OVERWRITE=libgromacs/_d for gromacs>=5.0 to influence the >>> search. >>> >>> >>> -- Configuring incomplete, errors occurred! >>> >>> >>> Thank you very much for your help. >>> >>> Best regards, >>> Chang >>> >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "votca" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at http://groups.google.com/group/votca. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. >> > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
