Dear Sikandar Mashayak,
Thank you very much for your help. It works now. I really appreciate
your kind help.
Best regards,
Chang
On Wed, Aug 12, 2015 at 12:33 PM, Sikandar Mashayak <[email protected]>
wrote:
> Hi Chang,
>
> This sounds like you do not have write permission to the folder. In which
> folder did you install tutorials? Make sure you have write permissions to
> that folder.
>
> Cheers,
> Sikandar
>
> On Wed, Aug 12, 2015 at 10:25 AM, Chang Woon Jang <[email protected]
> > wrote:
>
>> Dear Sikandar Mashayak,
>>
>>
>> Thank you very much for your advise. That is a great solution. I have
>> another question.
>>
>> When I run ./run in csg-tutorials/propane/atomistic/ with superuser mode
>> (su), it works. However, when I run the same thing without superuser, the
>> following error occured.
>>
>> Is there any knowing solution? I very appreciate your help.
>>
>>
>> -------------------------------------------------------
>> Program grompp, VERSION 4.6.8-dev-20150706-eea54d0
>> Source code file: /home/chang/VOTCA/src/gromacs/src/gmxlib/futil.c, line:
>> 542
>>
>> File input/output error:
>> mdout.mdp
>> For more information and tips for troubleshooting, please check the
>> GROMACS
>> website at http://www.gromacs.org/Documentation/Errors
>> -------------------------------------------------------
>>
>>
>> Best regards,
>> Chang
>>
>>
>> On Wed, Aug 12, 2015 at 12:03 PM, Sikandar Mashayak <[email protected]
>> > wrote:
>>
>>> Hi Chang,
>>>
>>> The error says the cmake could not find GROMACS. Is gromacs installed on
>>> the machine? If yes, then make sure it is in the PATH. Or you can also try
>>> building gromacs with tools and csg by running
>>>
>>> ./build.sh --prefix ${prefix} -ud gromacs tools csg
>>>
>>> I hope it helps.
>>>
>>> Cheers,
>>> Sikandar
>>>
>>> On Wed, Aug 12, 2015 at 9:11 AM, CHANG <[email protected]> wrote:
>>>
>>>> Dear VOTCA users,
>>>>
>>>> I followed the votca installation process. There is an error occured
>>>> duing ./build.sh --prefix ${prefix} -ud tools csg
>>>>
>>>>
>>>> 1. su
>>>> 2. prefix=/home/chang/VOTCA
>>>> 3. mkdir -p ${prefix}/src
>>>> 4. cd ${prefix}/src
>>>> 5. wget http://votca.googlecode.com/hg/build.sh
>>>> 6. chmod +x build.sh
>>>> 7. ./build.sh --prefix ${prefix} -ud tools csg
>>>>
>>>> The following error ocuured. Would you please let me know what the
>>>> problem is?
>>>> Do I need to install gromacs first?
>>>>
>>>>
>>>>
>>>> -- Looking for sqrt in m - found
>>>> -- checking for module 'libgmx_d'
>>>> -- package 'libgmx_d' not found
>>>> -- Could NOT find GROMACS (missing: GROMACS_LIBRARY
>>>> GROMACS_INCLUDE_DIR)
>>>> -- checking for module 'libgmx'
>>>> -- package 'libgmx' not found
>>>> -- Could NOT find GROMACS (missing: GROMACS_LIBRARY
>>>> GROMACS_INCLUDE_DIR)
>>>> -- checking for module 'libgromacs_d'
>>>> -- package 'libgromacs_d' not found
>>>> -- Could NOT find GROMACS (missing: GROMACS_LIBRARY
>>>> GROMACS_INCLUDE_DIR)
>>>> -- checking for module 'libgromacs'
>>>> -- package 'libgromacs' not found
>>>> -- Could NOT find GROMACS (missing: GROMACS_LIBRARY
>>>> GROMACS_INCLUDE_DIR)
>>>> CMake Error at src/libcsg/CMakeLists.txt:20 (message):
>>>> gromacs not found, make sure you have installed at least the
>>>> gromacs-4.0.7
>>>> and it's dev package. If the gromacs module was not found above,
>>>> make sure
>>>> you have sourced GMXRC or set PKG_CONFIG_PATH yourself. (use option
>>>> -DGROMACS_PKG_OVERWRITE=libgmx/_d for gromacs<5.0 and
>>>> -DGROMACS_PKG_OVERWRITE=libgromacs/_d for gromacs>=5.0 to influence
>>>> the
>>>> search.
>>>>
>>>>
>>>> -- Configuring incomplete, errors occurred!
>>>>
>>>>
>>>> Thank you very much for your help.
>>>>
>>>> Best regards,
>>>> Chang
>>>>
>>>>
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>>>>
>>>
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