2016-05-11 7:57 GMT-06:00 Tom <[email protected]>:
> I've managed to get it to work by installing Ubuntu 14.04 on the computer
> and using that instead of 16.04. I'm not sure exactly what the issue was,
> but it seems like something was changed between Ubuntu 14.04 and 16.04 that
> means Votca is no longer compatible.
Can you check what perl version you are running on Ubuntu 14.04 and
respectively 16.04?
And if the version differ can you try the following thing:
$ bash
$ fct() { echo "Hello from within function";}
$ export -f fct
$ perl -e 'print `fct`'
Christoph
>
> Tom
>
>
> On Wednesday, 11 May 2016 09:27:19 UTC+1, Tom wrote:
>>
>> Yeah, it's just vanilla 1.3, and I've sourced VOTCARC.bash. I just tried
>> the hexane IBI tutorial, and get the same error.
>>
>> Looking further up the inverse.log file, csg_get_property worked fine
>> earlier in the calculation, so I'm not sure why the command wasn't found
>> later on.
>>
>> On Tuesday, 10 May 2016 15:46:57 UTC+1, Christoph Junghans wrote:
>>>
>>> 2016-05-10 3:30 GMT-06:00 Tom <[email protected]>:
>>> > Hi,
>>> >
>>> > I'm in the process of installing Votca 1.3 on a new computer, running
>>> > Ubuntu
>>> > 16.04. The installation seemed to go fine, and I'm testing it by
>>> > running a
>>> > simple IBI calculation which worked on my other computer.
>>> >
>>> > The first simulation and calculating the RDFs both go fine, but then I
>>> > get
>>> > an error:
>>> >
>>> >> Running subscript 'update_ibi_pot.pl A-A.dist.tgt A-A.dist.new
>>> >> A-A.pot.cur
>>> >> A-A.dpot.pure_ibi' (from tags update ibi_pot) dir
>>> >> /home/tom/votca/share/votca/scripts/inverse
>>> >> /bin/bash: csg_get_property: command not found
>>> This seems to be the error!
>>>
>>> Are you running a vanilla version of VOTCA-CSG?
>>> Did you source VOTCARC.bash?
>>> Did you try running one of the tutorials to test your installation?
>>>
>>> Christoph
>>>
>>> >> csg_get_property: error in perl from bash function csg_get_property
>>> >>
>>> >> Callstack:
>>> >> /home/tom/votca/share/votca/scripts/inverse/inverse.sh - linenumber
>>> >> 264
>>> >> do_external - linenumber 176 in
>>> >> /home/tom/votca/share/votca/scripts/inverse/functions_common.sh
>>> >> /home/tom/votca/share/votca/scripts/inverse/update_ibi.sh -
>>> >> linenumber 32
>>> >> for_all - linenumber 22 (see 'csg_call --cat function
>>> >> for_all')
>>> >> do_external - linenumber 19 (see 'csg_call --cat
>>> >> function do_external')
>>> >>
>>> >> /home/tom/votca/share/votca/scripts/inverse/update_ibi_single.sh -
>>> >> linenumber 39
>>> >> do_external - linenumber 22 (see 'csg_call
>>> >> --cat function do_external')
>>> >> die - linenumber 2 (see 'csg_call
>>> >> --cat
>>> >> function die')
>>> >>
>>> >>
>>> >> ############################################################################################################################
>>> >> #
>>> >> #
>>> >> # ERROR:
>>> >> #
>>> >> # do_external: subscript
>>> >> #
>>> >> # /home/tom/votca/share/votca/scripts/inverse/update_ibi_pot.pl
>>> >> A-A.dist.tgt A-A.dist.new A-A.pot.cur A-A.dpot.pure_ibi #
>>> >> # (from tags update ibi_pot) failed
>>> >> #
>>> >> # For details see the logfile /home/tom/test/inverse.log
>>> >> #
>>> >> #
>>> >> #
>>> >>
>>> >>
>>> >> ############################################################################################################################
>>> >> die: (called from 8029) CSG_MASTER_PID is 2747
>>> >> die: pids to kill: 0
>>> >
>>> >
>>> > I've tried reinstalling Votca, but I still get the same error. Does
>>> > anyone
>>> > know what might be causing this?
>>> >
>>> > Thanks,
>>> > Tom
>>> >
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>>>
>>>
>>>
>>> --
>>> Christoph Junghans
>>> Web: http://www.compphys.de
>
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