I did some research and that seems to be unique behavior on newer Ubuntu/Debian: https://github.com/votca/csg/issues/179
2016-05-16 7:35 GMT-06:00 Tom <[email protected]>: > They do use different versions, 14.04 uses Perl 5.18.2, and 16.04 uses Perl > 5.22.2. > > Unfortunately I can't go back and test, as I decided to keep 14.04 on the > computer, and uninstalled 16.04 before I saw your post. > > On Wednesday, 11 May 2016 16:32:22 UTC+1, Christoph Junghans wrote: >> >> 2016-05-11 7:57 GMT-06:00 Tom <[email protected]>: >> > I've managed to get it to work by installing Ubuntu 14.04 on the >> > computer >> > and using that instead of 16.04. I'm not sure exactly what the issue >> > was, >> > but it seems like something was changed between Ubuntu 14.04 and 16.04 >> > that >> > means Votca is no longer compatible. >> Can you check what perl version you are running on Ubuntu 14.04 and >> respectively 16.04? >> >> And if the version differ can you try the following thing: >> $ bash >> $ fct() { echo "Hello from within function";} >> $ export -f fct >> $ perl -e 'print `fct`' >> >> Christoph >> > >> > Tom >> > >> > >> > On Wednesday, 11 May 2016 09:27:19 UTC+1, Tom wrote: >> >> >> >> Yeah, it's just vanilla 1.3, and I've sourced VOTCARC.bash. I just >> >> tried >> >> the hexane IBI tutorial, and get the same error. >> >> >> >> Looking further up the inverse.log file, csg_get_property worked fine >> >> earlier in the calculation, so I'm not sure why the command wasn't >> >> found >> >> later on. >> >> >> >> On Tuesday, 10 May 2016 15:46:57 UTC+1, Christoph Junghans wrote: >> >>> >> >>> 2016-05-10 3:30 GMT-06:00 Tom <[email protected]>: >> >>> > Hi, >> >>> > >> >>> > I'm in the process of installing Votca 1.3 on a new computer, >> >>> > running >> >>> > Ubuntu >> >>> > 16.04. The installation seemed to go fine, and I'm testing it by >> >>> > running a >> >>> > simple IBI calculation which worked on my other computer. >> >>> > >> >>> > The first simulation and calculating the RDFs both go fine, but then >> >>> > I >> >>> > get >> >>> > an error: >> >>> > >> >>> >> Running subscript 'update_ibi_pot.pl A-A.dist.tgt A-A.dist.new >> >>> >> A-A.pot.cur >> >>> >> A-A.dpot.pure_ibi' (from tags update ibi_pot) dir >> >>> >> /home/tom/votca/share/votca/scripts/inverse >> >>> >> /bin/bash: csg_get_property: command not found >> >>> This seems to be the error! >> >>> >> >>> Are you running a vanilla version of VOTCA-CSG? >> >>> Did you source VOTCARC.bash? >> >>> Did you try running one of the tutorials to test your installation? >> >>> >> >>> Christoph >> >>> >> >>> >> csg_get_property: error in perl from bash function csg_get_property >> >>> >> >> >>> >> Callstack: >> >>> >> /home/tom/votca/share/votca/scripts/inverse/inverse.sh - linenumber >> >>> >> 264 >> >>> >> do_external - linenumber 176 in >> >>> >> /home/tom/votca/share/votca/scripts/inverse/functions_common.sh >> >>> >> /home/tom/votca/share/votca/scripts/inverse/update_ibi.sh - >> >>> >> linenumber 32 >> >>> >> for_all - linenumber 22 (see 'csg_call --cat function >> >>> >> for_all') >> >>> >> do_external - linenumber 19 (see 'csg_call >> >>> >> --cat >> >>> >> function do_external') >> >>> >> >> >>> >> /home/tom/votca/share/votca/scripts/inverse/update_ibi_single.sh - >> >>> >> linenumber 39 >> >>> >> do_external - linenumber 22 (see >> >>> >> 'csg_call >> >>> >> --cat function do_external') >> >>> >> die - linenumber 2 (see 'csg_call >> >>> >> --cat >> >>> >> function die') >> >>> >> >> >>> >> >> >>> >> >> >>> >> ############################################################################################################################ >> >>> >> # >> >>> >> # >> >>> >> # ERROR: >> >>> >> # >> >>> >> # do_external: subscript >> >>> >> # >> >>> >> # /home/tom/votca/share/votca/scripts/inverse/update_ibi_pot.pl >> >>> >> A-A.dist.tgt A-A.dist.new A-A.pot.cur A-A.dpot.pure_ibi # >> >>> >> # (from tags update ibi_pot) failed >> >>> >> # >> >>> >> # For details see the logfile /home/tom/test/inverse.log >> >>> >> # >> >>> >> # >> >>> >> # >> >>> >> >> >>> >> >> >>> >> >> >>> >> ############################################################################################################################ >> >>> >> die: (called from 8029) CSG_MASTER_PID is 2747 >> >>> >> die: pids to kill: 0 >> >>> > >> >>> > >> >>> > I've tried reinstalling Votca, but I still get the same error. Does >> >>> > anyone >> >>> > know what might be causing this? >> >>> > >> >>> > Thanks, >> >>> > Tom >> >>> > >> >>> > -- >> >>> > You received this message because you are subscribed to the Google >> >>> > Groups >> >>> > "votca" group. >> >>> > To unsubscribe from this group and stop receiving emails from it, >> >>> > send >> >>> > an >> >>> > email to [email protected]. >> >>> > To post to this group, send email to [email protected]. >> >>> > Visit this group at https://groups.google.com/group/votca. >> >>> > For more options, visit https://groups.google.com/d/optout. >> >>> >> >>> >> >>> >> >>> -- >> >>> Christoph Junghans >> >>> Web: http://www.compphys.de >> > >> > -- >> > You received this message because you are subscribed to the Google >> > Groups >> > "votca" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> > an >> > email to [email protected]. >> > To post to this group, send email to [email protected]. >> > Visit this group at https://groups.google.com/group/votca. >> > For more options, visit https://groups.google.com/d/optout. >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
