Hi Robert,
2017-01-25 9:16 GMT-07:00 Robert Elder <[email protected]>: > Hi Jens and list: > > I have attached the scripts I used to build VOTCA, and the resulting log > files. I called the scripts like `source build.intel.sh &> log.build.intel`. > The build fails without the options to disable Intel MKL, the 'intel' files, > with either 1 process (./build.sh -j1) or many processes (e.g. ./build.sh > -j12, or without -j option). The build succeeds with the options to disable > Intel MKL (-DWITH_MKL=OFF -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON), the > 'no-intel' files, again regardless of how many processes. > > When I reported the problem it was the 1.4 release, but now it looks like > it's 1.5-dev. This is on one of our HPC clusters, an SGI ICE X machine. > > Let me know if I can provide any other information. The later build error is a missing dependency, which I fixed <https://github.com/votca/tools/commit/99b8bc547a76b2afaf97d45149a8a756b5c8e775> however one out of 10 times I get an download error (with the same mismatching hash!) as well, so I am guess it is a problem with intel web server. Christoph > > Cheers, > Robert > > > On Monday, January 23, 2017 at 10:27:31 AM UTC-5, Robert Elder wrote: >> >> The machine I was using to build is down at the moment, but I'll send a >> build log when I can. >> >> Cheers, >> Robert >> >> On Friday, January 20, 2017 at 1:15:54 PM UTC-5, [email protected] wrote: >>> >>> Hi Robert, >>> >>> I was unable to reproduce the error. May you send me the complete build >>> log? >>> >>> Cheers >>> >>> Jens >>> >>> Am Donnerstag, 19. Januar 2017 19:01:23 UTC+1 schrieb Robert Elder: >>>> >>>> Hi Users: >>>> >>>> I just wanted to share a Votca compilation problem and solution I >>>> encountered recently. When running the build.sh script, as described here >>>> (https://github.com/votca/csg/wiki/Installing#from-source), I encountered >>>> this error: >>>> >>>> [snip] >>>> >>>> cleaning tools >>>> buidling tools >>>> Scanning dependencies of target votca_tools_manpages >>>> [ 0%] Built target votca_tools_manpages >>>> Scanning dependencies of target intel >>>> Scanning dependencies of target gitversion >>>> Current git revision is 7ca4a6d >>>> [ 0%] Built target gitversion >>>> Scanning dependencies of target votca_tools >>>> [ 2%] Creating directories for 'intel' >>>> [ 4%] Performing download step (download, verify and extract) for >>>> 'intel' >>>> [ 7%] -- downloading... >>>> >>>> src='http://software.intel.com/sites/default/files/managed/76/8c/intel-mkl-and-boost-example.zip' >>>> >>>> dst='/p/home/elderr/src/votca/src/tools/intel/src/intel-mkl-and-boost-example.zip' >>>> timeout='none' >>>> [ 9%] Building CXX object >>>> src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o >>>> CMake Error at intel-stamp/download-intel.cmake:9 (file): >>>> file DOWNLOAD HASH mismatch >>>> >>>> for file: >>>> [/p/home/elderr/src/votca/src/tools/intel/src/intel-mkl-and-boost-example.zip] >>>> expected hash: [b957ee63a2167ad21b650b47726cd55c] >>>> actual hash: [d41d8cd98f00b204e9800998ecf8427e] >>>> >>>> >>>> >>>> make[2]: *** [intel/src/intel-stamp/intel-download] Error 1 >>>> make[1]: *** [CMakeFiles/intel.dir/all] Error 2 >>>> make[1]: *** Waiting for unfinished jobs.... >>>> >>>> [snip] >>>> >>>> Basically CMake failed because the hashes on >>>> intel-mkl-and-boost-example.zip did not match -- the reason being that the >>>> downloaded intel-mkl-and-boost-example.zip was a zero byte file! I have no >>>> idea why; perhaps some obscure problem on our machine. I don't know CMake >>>> well enough, but it seems to be running with multiple threads -- maybe a >>>> race condition on download vs. hash? Just speculation. >>>> >>>> Anyway I solved this by downloading the 'src' file from >>>> http://software.intel.com manually and putting it in the required location >>>> ('dst'). Then I reran the build script, it picked up where it left off and >>>> completed without a problem. >>>> >>>> Hopefully that helps someone. Thanks for this great tool! >>>> -Robert Elder > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
