2017-01-25 11:03 GMT-07:00 Robert Elder <[email protected]>: > I already deleted it, but it was a zero-byte file. I get the same hash if I > do: touch tmpfile; md5sum tmpfile Yeah, google told me the same thing ;-) So this issue seems to be a bug in cmake or intel webserver.
Christoph > > On Wed, Jan 25, 2017 at 12:59 PM, Christoph Junghans <[email protected]> > wrote: >> >> Robert, >> >> do you still have the intel zip with the hash >> d41d8cd98f00b204e9800998ecf8427e (use md5sum)? >> >> Christoph >> >> 2017-01-25 10:52 GMT-07:00 Christoph Junghans <[email protected]>: >> > Hi Robert, >> > >> > >> > >> > 2017-01-25 9:16 GMT-07:00 Robert Elder <[email protected]>: >> >> Hi Jens and list: >> >> >> >> I have attached the scripts I used to build VOTCA, and the resulting >> >> log >> >> files. I called the scripts like `source build.intel.sh &> >> >> log.build.intel`. >> >> The build fails without the options to disable Intel MKL, the 'intel' >> >> files, >> >> with either 1 process (./build.sh -j1) or many processes (e.g. >> >> ./build.sh >> >> -j12, or without -j option). The build succeeds with the options to >> >> disable >> >> Intel MKL (-DWITH_MKL=OFF -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON), the >> >> 'no-intel' files, again regardless of how many processes. >> >> >> >> When I reported the problem it was the 1.4 release, but now it looks >> >> like >> >> it's 1.5-dev. This is on one of our HPC clusters, an SGI ICE X machine. >> >> >> >> Let me know if I can provide any other information. >> > The later build error is a missing dependency, which I fixed >> > >> > <https://github.com/votca/tools/commit/99b8bc547a76b2afaf97d45149a8a756b5c8e775> >> > however one out of 10 times I get an download error (with the same >> > mismatching hash!) as well, so I am guess it is a problem with intel >> > web server. >> > >> > Christoph >> >> >> >> Cheers, >> >> Robert >> >> >> >> >> >> On Monday, January 23, 2017 at 10:27:31 AM UTC-5, Robert Elder wrote: >> >>> >> >>> The machine I was using to build is down at the moment, but I'll send >> >>> a >> >>> build log when I can. >> >>> >> >>> Cheers, >> >>> Robert >> >>> >> >>> On Friday, January 20, 2017 at 1:15:54 PM UTC-5, [email protected] >> >>> wrote: >> >>>> >> >>>> Hi Robert, >> >>>> >> >>>> I was unable to reproduce the error. May you send me the complete >> >>>> build >> >>>> log? >> >>>> >> >>>> Cheers >> >>>> >> >>>> Jens >> >>>> >> >>>> Am Donnerstag, 19. Januar 2017 19:01:23 UTC+1 schrieb Robert Elder: >> >>>>> >> >>>>> Hi Users: >> >>>>> >> >>>>> I just wanted to share a Votca compilation problem and solution I >> >>>>> encountered recently. When running the build.sh script, as described >> >>>>> here >> >>>>> (https://github.com/votca/csg/wiki/Installing#from-source), I >> >>>>> encountered >> >>>>> this error: >> >>>>> >> >>>>> [snip] >> >>>>> >> >>>>> cleaning tools >> >>>>> buidling tools >> >>>>> Scanning dependencies of target votca_tools_manpages >> >>>>> [ 0%] Built target votca_tools_manpages >> >>>>> Scanning dependencies of target intel >> >>>>> Scanning dependencies of target gitversion >> >>>>> Current git revision is 7ca4a6d >> >>>>> [ 0%] Built target gitversion >> >>>>> Scanning dependencies of target votca_tools >> >>>>> [ 2%] Creating directories for 'intel' >> >>>>> [ 4%] Performing download step (download, verify and extract) for >> >>>>> 'intel' >> >>>>> [ 7%] -- downloading... >> >>>>> >> >>>>> >> >>>>> src='http://software.intel.com/sites/default/files/managed/76/8c/intel-mkl-and-boost-example.zip' >> >>>>> >> >>>>> >> >>>>> dst='/p/home/elderr/src/votca/src/tools/intel/src/intel-mkl-and-boost-example.zip' >> >>>>> timeout='none' >> >>>>> [ 9%] Building CXX object >> >>>>> src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o >> >>>>> CMake Error at intel-stamp/download-intel.cmake:9 (file): >> >>>>> file DOWNLOAD HASH mismatch >> >>>>> >> >>>>> for file: >> >>>>> >> >>>>> [/p/home/elderr/src/votca/src/tools/intel/src/intel-mkl-and-boost-example.zip] >> >>>>> expected hash: [b957ee63a2167ad21b650b47726cd55c] >> >>>>> actual hash: [d41d8cd98f00b204e9800998ecf8427e] >> >>>>> >> >>>>> >> >>>>> >> >>>>> make[2]: *** [intel/src/intel-stamp/intel-download] Error 1 >> >>>>> make[1]: *** [CMakeFiles/intel.dir/all] Error 2 >> >>>>> make[1]: *** Waiting for unfinished jobs.... >> >>>>> >> >>>>> [snip] >> >>>>> >> >>>>> Basically CMake failed because the hashes on >> >>>>> intel-mkl-and-boost-example.zip did not match -- the reason being >> >>>>> that the >> >>>>> downloaded intel-mkl-and-boost-example.zip was a zero byte file! I >> >>>>> have no >> >>>>> idea why; perhaps some obscure problem on our machine. I don't know >> >>>>> CMake >> >>>>> well enough, but it seems to be running with multiple threads -- >> >>>>> maybe a >> >>>>> race condition on download vs. hash? Just speculation. >> >>>>> >> >>>>> Anyway I solved this by downloading the 'src' file from >> >>>>> http://software.intel.com manually and putting it in the required >> >>>>> location >> >>>>> ('dst'). Then I reran the build script, it picked up where it left >> >>>>> off and >> >>>>> completed without a problem. >> >>>>> >> >>>>> Hopefully that helps someone. Thanks for this great tool! >> >>>>> -Robert Elder >> >> >> >> -- >> >> You received this message because you are subscribed to the Google >> >> Groups >> >> "votca" group. >> >> To unsubscribe from this group and stop receiving emails from it, send >> >> an >> >> email to [email protected]. >> >> To post to this group, send email to [email protected]. >> >> Visit this group at https://groups.google.com/group/votca. >> >> For more options, visit https://groups.google.com/d/optout. >> > >> > >> > >> > -- >> > Christoph Junghans >> > Web: http://www.compphys.de >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de >> >> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "votca" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/votca/zxKFRbW7c_w/unsubscribe. >> To unsubscribe from this group and all its topics, send an email to >> [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/votca. >> For more options, visit https://groups.google.com/d/optout. > > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/votca. > For more options, visit https://groups.google.com/d/optout. -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
