Dear Christoph, I found a discussion on this issue in spack at: https://github.com/LLNL/spack/issues/3146 I am not familiar with the solutions provided and I posted a further question below the discussion.
Best regards, Shiyun 在 2017年6月17日星期六 UTC+8上午1:09:00，Christoph Junghans写道： > > 2017-06-16 5:55 GMT-06:00 Shiyun Xiong <[email protected] <javascript:>>: > > > Dear Christoph, > > > > Thanks a lot for your kind help. Yes, it does not matter the usage of > the > > software without installing the manual. I was just curious for that. > > With the quota for the two paths in DCMAKE_PREFIX_PATH, it indeed works > > without appearing the warnings. > > The bug of spack has been reported. > Thanks, can you also report the openmpi issue on Centos7. > > Thanks, > > Christoph > > > > Thanks again for the help! > > > > With best regards, > > Shiyun > > > > 在 2017年6月15日星期四 UTC+8下午11:23:14，Christoph Junghans写道： > >> > >> 2017-06-15 6:50 GMT-06:00 Shiyun Xiong <[email protected]>: > >> > Dear Christoph, > >> > > >> > Thanks a lot for you kind help. > >> > > >> > After many tryings, I am now able to install votca with build.sh > except > >> > the > >> > manual. > >> > So the problem should caused by the old versions of many softwares on > >> > Centos > >> > system. First I uninstalled gcc4.4.7 and deleted all files related to > >> > all > >> > gcc versions except 6.1.0. The binutils, fftw and cmake packages are > >> > also > >> > reinstalled with the latest version (important for gromacs). > >> > Although votca is successfully installed, there are still several > points > >> > I > >> > am not clear: > >> > i) When installing the ctp-manual, an error "txt2tags wrote > >> > /home/xiong/votca/ctp-manual/reference/programs/kmc_ru.tex > >> > txt2tags: Error: Cannot read file: ctp_tools.t2t" > >> That is a question for votca-ctp mailing list, but honestly you don't > >> really need the manual to use ctp. > >> And older version can be found in files section of: > >> <http://www.votca.org/Documentation/charge-transport> > >> > >> > > >> > ii) When install votca with the command > >> > ./build.sh --prefix /usr/local/votca/ --dev tools csg kmc moo ctp > >> > ctp-tutorials -DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/ > >> > -DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so > >> > -DGROMACS_INCLUDE_DIR=/usr/local/gromacs/include/ > >> > -DGROMACS_LIBRARY=/usr/local/gromacs/lib64/libgromacs_mpi_d.so > >> > it successfully compiled but gave a warning: > >> > Manually-specified variables were not used by the > >> > project: > >> > FFTW3_INCLUDE_DIR > >> > FFTW3_LIBRARY > >> > GROMACS_INCLUDE_DIR > >> > GROMACS_LIBRARY > >> Well, FFTW3 variable are only needed to build tools and GROMACS > >> variables are only needed to build csg. > >> So, when building kmc moo ctp this warning will show up. > >> You could build tools first and then csg and then the rest to avoid > >> the warnings. > >> > >> > if I change the command to > >> > ./build.sh --prefix /usr/local/votca/ --dev tools csg kmc moo ctp > >> > ctp-tutorials > >> > -DCMAKE_PREFIX_PATH=/usr/local/fftw_shared;/usr/local/gromacs/ > >> I guess you forgot quotes around the two paths: > >> ./build.sh --prefix /usr/local/votca/ --dev tools csg kmc moo ctp > >> ctp-tutorials > >> -DCMAKE_PREFIX_PATH="/usr/local/fftw_shared;/usr/local/gromacs/" > >> > >> > > >> > It says "Could NOT find GROMACS (missing: GROMACS_LIBRARY > >> > GROMACS_INCLUDE_DIR GROMACS_VERSION)" > >> > but if I use the command: ./build.sh --prefix /usr/local/votca/ --dev > >> > tools > >> > csg kmc moo ctp ctp-tutorials > -DCMAKE_PREFIX_PATH=/usr/local/fftw_shared > >> > -DGROMACS_INCLUDE_DIR=/usr/local/gromacs/include/ > >> > -DGROMACS_LIBRARY=/usr/local/gromacs/lib64/libgromacs_mpi_d.so > >> > > >> > the fftw problem can be solved but gromacs is still not used. > >> > > >> > iii) When using spack to install votca, it seems we need the GitHub > >> > account > >> > and passport of votca! > >> No that is not true, votca is pull from the > https://github.com/votca/tools > >> (see > >> > >> < > https://github.com/LLNL/spack/blob/develop/var/spack/repos/builtin/packages/votca-tools/package.py#L39>) > > > >> which can be used anonymously (without an Github account). > >> Again, this seems to be a bug in Spack, which you should report here: > >> https://github.com/LLNL/spack/issues > >> > >> Honestly, if Votca-1.4 is enough for you, do: > >> <https://github.com/votca/csg/wiki/Installing#centos-7> > >> and install only votca-ctp and moo on top of it using build.sh. > >> > >> Christoph > >> > > >> > Thanks a lot > >> > Best regards, > >> > Shiyun > >> > > >> > > >> > > >> > 在 2017年6月13日星期二 UTC+8下午10:29:26，Christoph Junghans写道： > >> >> > >> >> 2017-06-12 6:46 GMT-06:00 Shiyun Xiong <[email protected]>: > >> >> > Dear Christoph, > >> >> > > >> >> > Thanks so much for your kind help. Sorry I still have problems. > >> >> > When using the develop version, there is an error when installing > the > >> >> > openmpi package. It seems that the gcc version it used is not my > >> >> > default > >> >> > version of 6.1.0 but 4.4.7. Even though I replace the /usr/bin/gcc > >> >> > with > >> >> > my > >> >> > 6.1.0 version, the same thing happens. The on screen file and the > log > >> >> > file > >> >> > is attached. > >> >> > > >> >> > On the other hand, I am also trying to install votca in another > >> >> > cluster > >> >> > (RedHat). I first installed gcc-6.3.0 and set it as the default > gcc > >> >> > version. > >> >> > However, when I use spack to intall votca, it also stoped on > openmpi > >> >> > installation again. But on this cluster, it says can not find the > >> >> > Fortran > >> >> > compile! When installing gcc, I have enable the fortran language > and > >> >> > also > >> >> > linked gfortran to /usr/bin/gfortran. When using "gfortran > --version" > >> >> > and > >> >> > "gcc --version", it does appear the correct version I installed. I > >> >> > don't > >> >> > know why this happens. I have also attached the on screen > information > >> >> > as > >> >> > onScreenInfo_Redhat.txt. The log file is empty so I did not > attached > >> >> > it. > >> >> If it fails building OpenMPI, that is really more a question for the > >> >> spack mailing list: > >> >> <https://groups.google.com/d/forum/spack> > >> >> or its issue tracker: > >> >> <https://github.com/LLNL/spack/issues> > >> >> > >> >> Christoph > >> >> > >> >> > > >> >> > THanks a lot. > >> >> > Shiyun > >> >> > > >> >> > 在 2017年6月9日星期五 UTC+8下午10:59:47，Christoph Junghans写道： > >> >> >> > >> >> >> 2017-06-09 5:43 GMT-06:00 Shiyun Xiong <[email protected]>: > >> >> >> > Dear Christoph, > >> >> >> > > >> >> >> > Thanks for your suggestions and I am sorry for the late reply: > I > >> >> >> > was > >> >> >> > travelling last two weeks and were not able to try your > >> >> >> > suggestions. > >> >> >> > > >> >> >> > When running strings -a /path/to/libboost_program_options.so | > >> >> >> > grep > >> >> >> > GCC, > >> >> >> > I > >> >> >> > got: > >> >> >> > GCC_3.0 > >> >> >> > GCC: (GNU) 4.4.7 20120313 (Red Hat 4.4.7-11) > >> >> >> > GCC: (GNU) 6.1.0 > >> >> >> > _Unwind_Resume@@GCC_3.0 > >> >> >> > Does this means my boost is not installed by gcc-6.1? I don't > why > >> >> >> > it > >> >> >> > shows > >> >> >> > several versions of gcc. Even when I compile the boost with > >> >> >> > ./bootstrap.sh > >> >> >> > --with-toolset=gcc, ./b2 --toolset=gcc-6.1.0, I got the same > >> >> >> > information. > >> >> >> It seems like it is build with gcc-6.1, I guess. > >> >> >> > >> >> >> > > >> >> >> > Also, you recommended me to install boost in another directory, > >> >> >> > but > >> >> >> > in > >> >> >> > this > >> >> >> > case, votca can not find the boost package even when I > specified > >> >> >> > the > >> >> >> > path of > >> >> >> > boost header files and libraries as I mention before. Do you > have > >> >> >> > any > >> >> >> > ideas > >> >> >> > on why this happens? > >> >> >> It depends on your cmake version how to override the Boost search > >> >> >> path, look for the documentation in the FindBoost.cmake coming > with > >> >> >> your cmake installation. > >> >> >> The latest version uses BOOSTROOT or BOOST_ROOT: > >> >> >> > >> >> >> > >> >> >> > >> >> >> < > https://gitlab.kitware.com/cmake/cmake/blob/master/Modules/FindBoost.cmake#L42> > > > >> >> >> I am not 100% sure if these are cmake variables or just > environment > >> >> >> variables. > >> >> >> > >> >> >> As an alternative you could use CMAKE_PREFIX_PATH as well! > >> >> >> > >> >> >> > > >> >> >> > The spack option has also been tried, while I also did not > success > >> >> >> > to > >> >> >> > install votca-csg. The corresponding on screen information and > log > >> >> >> > files > >> >> >> > are > >> >> >> > attached. Besides, it seems votca-ctp is not involved in spack > (I > >> >> >> > tried > >> >> >> > to > >> >> >> > append votca-ctp after the commend but it says it can not find > the > >> >> >> > votca-ctp > >> >> >> > package), while this is actually the one I needed. > >> >> >> I can add votca-ctp to spack as well if needed. > >> >> >> Any how you got hit by <https://github.com/votca/csg/issues/209> > >> >> >> again: > >> >> >> To overcome this install the development version using spack: > >> >> >> $ spack install votca-csg@develop votca-tools@develop > >> >> >> > >> >> >> Christoph > >> >> >> > > >> >> >> > Your further help is greatly appreciated. > >> >> >> > Best regards, > >> >> >> > Shiyun > >> >> >> > > >> >> >> > > >> >> >> > 在 2017年5月28日星期日 UTC+8上午5:24:27，Christoph Junghans写道： > >> >> >> >> > >> >> >> >> 2017-05-26 21:02 GMT-06:00 Shiyun Xiong <[email protected]>: > > >> >> >> >> > Dear Christoph, > >> >> >> >> > > >> >> >> >> > Thanks a lot for providing the solutions. > >> >> >> >> > For the first point of using the system gcc and boost: my > >> >> >> >> > system > >> >> >> >> > gcc > >> >> >> >> > (/usr/bin/gcc) version is 4.4.7 released in 2012, hence it > is > >> >> >> >> > rather > >> >> >> >> > old. > >> >> >> >> > Also, I can not find (I don't know) where is the system > boost > >> >> >> >> > header > >> >> >> >> > files > >> >> >> >> > although I can find the system boost library is in the > >> >> >> >> > /usr/lib64/ > >> >> >> >> > fold. > >> >> >> >> > Most importantly, as mentioned in my first post, when the > boost > >> >> >> >> > paths > >> >> >> >> > are > >> >> >> >> > specified during the votca installation, it says can not > find > >> >> >> >> > the > >> >> >> >> > required > >> >> >> >> > boost package. As a result, I haven't try this solution! > >> >> >> >> Yes, gcc-4.4.7 would also not support C++11, gcc-4.8 is the > first > >> >> >> >> one > >> >> >> >> supporting enough of it to compile VOTCA. > >> >> >> >> > > >> >> >> >> > The second method of using another boost version with the > same > >> >> >> >> > gcc > >> >> >> >> > compiler > >> >> >> >> > as votca: I actually using the default gcc to compile both > >> >> >> >> > Boost > >> >> >> >> > and > >> >> >> >> > Votca > >> >> >> >> > (which gcc --> /usr/local/bin/gcc gcc --version --> gcc > >> >> >> >> > (GCC) > >> >> >> >> > 6.1.0). > >> >> >> >> > So > >> >> >> >> > I think the gcc used to compile both BOOST and votca is the > >> >> >> >> > same. > >> >> >> >> > Using > >> >> >> >> > the > >> >> >> >> > default gcc, I now installed the BOOST 1.62.0 version. > However, > >> >> >> >> > the > >> >> >> >> > "undefined reference" error still appears. For gcc 6.1, I > >> >> >> >> > checked > >> >> >> >> > it > >> >> >> >> > support > >> >> >> >> > the c++11 standard. > >> >> >> >> Something seems broken here, if you are lucky > >> >> >> >> $ strings -a /path/to/libboost_program_options.so | grep GCC > >> >> >> >> will reveal to you, which gcc was used to compile boost. > >> >> >> >> > >> >> >> >> But I would try to recompile boost in another directory using > >> >> >> >> gcc-6.1 > >> >> >> >> > >> >> >> >> I recently added votca to spack, so you might have a chance to > >> >> >> >> install > >> >> >> >> it that way: > >> >> >> >> <https://github.com/votca/csg/wiki/Installing#spack> > >> >> >> >> > >> >> >> >> Christoph > >> >> >> >> > > >> >> >> >> > For the third one: my system is Centos, it seems there is > not > >> >> >> >> > votca > >> >> >> >> > install. > >> >> >> >> > > >> >> >> >> > Best Regards, > >> >> >> >> > Shiyun > >> >> >> >> > > >> >> >> >> > > >> >> >> >> > 在 2017年5月27日星期六 UTC+8上午12:22:32，Christoph Junghans写道： > >> >> >> >> >> > >> >> >> >> >> 2017-05-26 4:23 GMT-06:00 Shiyun Xiong <[email protected]>: > > >> >> >> >> >> > Dear Christoph, > >> >> >> >> >> > > >> >> >> >> >> > I have install the latest BOOST version 1.64.0. However, > I > >> >> >> >> >> > have > >> >> >> >> >> > encountered > >> >> >> >> >> > other errors: 'Make_array' is not a member of > >> >> >> >> >> > 'boost::serialization'. > >> >> >> >> >> Yup, boost 1.64.0 has a bug (see here: > >> >> >> >> >> <https://svn.boost.org/trac/boost/ticket/12516>), which > has > >> >> >> >> >> nothing > >> >> >> >> >> to > >> >> >> >> >> do with VOTCA. 1.64 is very new release and hence not very > >> >> >> >> >> well > >> >> >> >> >> tested. > >> >> >> >> >> > >> >> >> >> >> > In fact, I have used this version of BOOST at the > beginning > >> >> >> >> >> > and > >> >> >> >> >> > this > >> >> >> >> >> > error > >> >> >> >> >> > occured. Denis suggested me to downgrade my boost version > >> >> >> >> >> > and I > >> >> >> >> >> > found > >> >> >> >> >> > from > >> >> >> >> >> > the votca website that 1.53 is a recommanded version. > That's > >> >> >> >> >> > why I > >> >> >> >> >> > used > >> >> >> >> >> > 1.53 > >> >> >> >> >> Ok, let me try to clarify. VOTCA works pretty much works > with > >> >> >> >> >> any > >> >> >> >> >> gcc > >> >> >> >> >> and boost version (except may the above mentioned > >> >> >> >> >> boost-1.64.0). > >> >> >> >> >> > >> >> >> >> >> However, VOTCA (from version 1.4on ) uses C++-11 features > and > >> >> >> >> >> hence > >> >> >> >> >> depends on C++-11 ABI. Unfortunately, <=gcc-4.9, gcc-5* and > >> >> >> >> >> >=gcc-6 > >> >> >> >> >> have 3 different C++-11 ABIs and hence you will get the > >> >> >> >> >> "undefined > >> >> >> >> >> reference" error from above when trying to link VOTCA > against > >> >> >> >> >> a > >> >> >> >> >> boost, > >> >> >> >> >> which was built with a different C++-11 ABI. > >> >> >> >> >> > >> >> >> >> >> There are multiple solutions to that issue: > >> >> >> >> >> 1.) Use the system (NOT /usr/local) gcc and boost - usually > >> >> >> >> >> the > >> >> >> >> >> Linux > >> >> >> >> >> distributions get their thing together nicely. > >> >> >> >> >> 2.) Use a (non-buggy) boost version, which is compiled with > >> >> >> >> >> SAME > >> >> >> >> >> compiler as you are compiling VOTCA with. > >> >> >> >> >> 3.) If you don't need the development version of VOTCA, > just > >> >> >> >> >> use > >> >> >> >> >> the > >> >> >> >> >> package, which comes with your linux distributions - > OpenSuse, > >> >> >> >> >> Fedora, > >> >> >> >> >> Debian, Ubuntu have VOTCA packages. See > >> >> >> >> >> <https://github.com/votca/csg/wiki/Installing> > >> >> >> >> >> > >> >> >> >> >> Christoph > >> >> >> >> >> > >> >> >> >> >> > > >> >> >> >> >> > Attached are the on screen information and cmake error > >> >> >> >> >> > information. > >> >> >> >> >> > Please > >> >> >> >> >> > check it. Thank you so much! > >> >> >> >> >> > > >> >> >> >> >> > Best regards, > >> >> >> >> >> > Shiyun > >> >> >> >> >> > > >> >> >> >> >> > > >> >> >> >> >> > 在 2017年5月24日星期三 UTC+8下午9:53:25，Christoph Junghans写道： > >> >> >> >> >> >> > >> >> >> >> >> >> 2017-05-24 2:00 GMT-06:00 Bensen-zjg Zhang > >> >> >> >> >> >> <[email protected]>: > >> >> >> >> >> >> > Dear VOTCA developers and users, > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > I am trying to install the VOTCA software with > build.sh > >> >> >> >> >> >> > on > >> >> >> >> >> >> > Centos > >> >> >> >> >> >> > system > >> >> >> >> >> >> > but > >> >> >> >> >> >> > encountered some errors. Before install votca, I have > >> >> >> >> >> >> > installed > >> >> >> >> >> >> > all > >> >> >> >> >> >> > the > >> >> >> >> >> >> > dependencies: Boost, Git, GSL, FFTW3, EXPAT, > PkgConfig, > >> >> >> >> >> >> > SQLITE3, > >> >> >> >> >> >> > Doxygen, > >> >> >> >> >> >> > Gromacs. The gcc version is 6.1.0 and the current > boost > >> >> >> >> >> >> > version > >> >> >> >> >> >> > is > >> >> >> >> >> >> > 1.53.0. > >> >> >> >> >> >> > The installation command I used is: > >> >> >> >> >> >> > > >> >> >> >> >> >> > ./build.sh --prefix /usr/local/votca/ > >> >> >> >> >> >> > -DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/ > >> >> >> >> >> >> > -DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so > >> >> >> >> >> >> > --dev > >> >> >> >> >> >> > tools > >> >> >> >> >> >> > csg > >> >> >> >> >> >> > kmc > >> >> >> >> >> >> > moo ctp ctp-tutorials ctp-manual > >> >> >> >> >> >> > > >> >> >> >> >> >> > With this building command, I got the following error > >> >> >> >> >> >> > information: > >> >> >> >> >> >> > /usr/local/lib/libboost_program_options.so: undefined > >> >> >> >> >> >> > reference > >> >> >> >> >> >> > to > >> >> >> >> >> >> > `std::__cxx11::basic_string<char, > std::char_traits<char>, > >> >> >> >> >> >> > std::allocator<char> > >::~basic_string()@GLIBCXX_3.4.21' > >> >> >> >> >> >> Errors like these usually mean your boost has been > compiled > >> >> >> >> >> >> with > >> >> >> >> >> >> an > >> >> >> >> >> >> older (ABI-incompatible) version of gcc. > >> >> >> >> >> >> (I am guessing so, as you are using gcc-6.1 which > >> >> >> >> >> >> relatively > >> >> >> >> >> >> recent, > >> >> >> >> >> >> while boost-1.53 is actually more than 4 years old.) > >> >> >> >> >> >> > >> >> >> >> >> >> See the troubleshooting block of > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> > https://gcc.gnu.org/onlinedocs/gcc-5.2.0/libstdc++/manual/manual/using_dual_abi.html > > >> >> >> >> >> >> for details. > >> >> >> >> >> >> > >> >> >> >> >> >> Just install a newer version of boost using your gcc-6.1 > >> >> >> >> >> >> and > >> >> >> >> >> >> have > >> >> >> >> >> >> VOTCA compile against that one. > >> >> >> >> >> >> > >> >> >> >> >> >> Christoph > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> > /usr/local/lib/libboost_program_options.so: undefined > >> >> >> >> >> >> > reference > >> >> >> >> >> >> > to > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > > `std::logic_error::logic_error(std::__cxx11::basic_string<char, > >> >> >> >> >> >> > std::char_traits<char>, std::allocator<char> > > >> >> >> >> >> >> > const&)@GLIBCXX_3.4.21' > >> >> >> >> >> >> > /usr/local/lib/libboost_program_options.so: undefined > >> >> >> >> >> >> > reference > >> >> >> >> >> >> > to > >> >> >> >> >> >> > `std::__cxx11::basic_string<wchar_t, > >> >> >> >> >> >> > std::char_traits<wchar_t>, > >> >> >> >> >> >> > std::allocator<wchar_t> > >> >> >> >> >> >> > >::~basic_string()@GLIBCXX_3.4.21' > >> >> >> >> >> >> > /usr/local/lib/libboost_program_options.so: undefined > >> >> >> >> >> >> > reference > >> >> >> >> >> >> > to > >> >> >> >> >> >> > `operator > >> >> >> >> >> >> > delete(void*, unsigned long)@CXXABI_1.3.9' > >> >> >> >> >> >> > /usr/local/lib/libboost_program_options.so: undefined > >> >> >> >> >> >> > reference > >> >> >> >> >> >> > to > >> >> >> >> >> >> > `std::__cxx11::basic_string<char, > std::char_traits<char>, > >> >> >> >> >> >> > std::allocator<char> >::_M_replace(unsigned long, > >> >> >> >> >> >> > unsigned > >> >> >> >> >> >> > long, > >> >> >> >> >> >> > char > >> >> >> >> >> >> > const*, unsigned long)@GLIBCXX_3.4.21' > >> >> >> >> >> >> > /usr/local/lib/libboost_program_options.so: undefined > >> >> >> >> >> >> > reference > >> >> >> >> >> >> > to > >> >> >> >> >> >> > `std::__cxx11::basic_string<char, > std::char_traits<char>, > >> >> >> >> >> >> > std::allocator<char> >::find(char const*, unsigned > long, > >> >> >> >> >> >> > unsigned > >> >> >> >> >> >> > long) > >> >> >> >> >> >> > const@GLIBCXX_3.4.21' > >> >> >> >> >> >> > /usr/local/lib/libboost_filesystem.so: undefined > >> >> >> >> >> >> > reference > >> >> >> >> >> >> > to > >> >> >> >> >> >> > `std::__cxx11::basic_string<char, > std::char_traits<char>, > >> >> >> >> >> >> > std::allocator<char> >::rfind(char, unsigned long) > >> >> >> >> >> >> > const@GLIBCXX_3.4.21' > >> >> >> >> >> >> > collect2: ld returned 1 exit status > >> >> >> >> >> >> > make[2]: *** [src/tools/votca_property] Error 1 > >> >> >> >> >> >> > make[1]: *** > >> >> >> >> >> >> > [src/tools/CMakeFiles/votca_property.dir/all] > >> >> >> >> >> >> > Error 2 > >> >> >> >> >> >> > make: *** [all] Error 2 > >> >> >> >> >> >> > > >> >> >> >> >> >> > When searching from the previous discussions, I found > >> >> >> >> >> >> > that I > >> >> >> >> >> >> > may > >> >> >> >> >> >> > need > >> >> >> >> >> >> > to > >> >> >> >> >> >> > specify the Boost path. As a result, I tried: > >> >> >> >> >> >> > > >> >> >> >> >> >> > ./build.sh --prefix /usr/local/votca/ > >> >> >> >> >> >> > -DFFTW3_INCLUDE_DIR=/usr/local/fftw_shared/include/ > >> >> >> >> >> >> > -DFFTW3_LIBRARY=/usr/local/fftw_shared/lib/libfftw3.so > >> >> >> >> >> >> > -DBoost_INCLUDE_DIR=/usr/local/include/boost/ > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > > -DBoost_PROGRAM_OPTIONS_LIBRARY=/usr/local/lib/libboost_program_options.so > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > > -DBoost_FILESYSTEM_LIBRARY=/usr/local/lib/libboost_filesystem.so > >> >> >> >> >> >> > --dev > >> >> >> >> >> >> > tools > >> >> >> >> >> >> > csg kmc moo ctp ctp-tutorials ctp-manual > >> >> >> >> >> >> > > >> >> >> >> >> >> > > >> >> >> >> >> >> > This time, votca can not find the boost package? I > have > >> >> >> >> >> >> > no > >> >> >> >> >> >> > idea > >> >> >> >> >> >> > why > >> >> >> >> >> >> > it > >> >> >> >> >> >> > can > >> >> >> >> >> >> > not find boost since I have specified the path to it! > >> >> >> >> >> >> > For more information, I have attached the entire on > >> >> >> >> >> >> > screen > >> >> >> >> >> >> > printed > >> >> >> >> >> >> > information and the cmake error file. The file names > with > >> >> >> >> >> >> > "_noBoostPath" > >> >> >> >> >> >> > correspond to the first building command (no boost > path > >> >> >> >> >> >> > is > >> >> >> >> >> >> > specified) > >> >> >> >> >> >> > while > >> >> >> >> >> >> > the file names with "_withBoostPath" correspond to the > >> >> >> >> >> >> > second > >> >> >> >> >> >> > building > >> >> >> >> >> >> > command. > >> >> >> >> >> >> > > >> >> >> >> >> >> > By the way, when using the second building command, > votca > >> >> >> >> >> >> > find > >> >> >> >> >> >> > both > >> >> >> >> >> >> > GSL > >> >> >> >> >> >> > and > >> >> >> >> >> >> > MKL libraries, so I have also tried to disable the mkl > >> >> >> >> >> >> > library > >> >> >> >> >> >> > with > >> >> >> >> >> >> > -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON, but not change > >> >> >> >> >> >> > happens. > >> >> >> >> >> >> > > >> >> >> >> >> >> > Thank you very much for your kind help! > >> >> >> >> >> >> > With best regards, > >> >> >> >> >> >> > Shiyun > >> >> >> >> >> >> > > >> >> >> >> >> >> > -- > >> >> >> >> >> >> > You received this message because you are subscribed > to > >> >> >> >> >> >> > the > >> >> >> >> >> >> > Google > >> >> >> >> >> >> > Groups > >> >> >> >> >> >> > "votca" group. > >> >> >> >> >> >> > To unsubscribe from this group and stop receiving > emails > >> >> >> >> >> >> > from > >> >> >> >> >> >> > it, > >> >> >> >> >> >> > send > >> >> >> >> >> >> > an > >> >> >> >> >> >> > email to [email protected]. > >> >> >> >> >> >> > To post to this group, send email to > >> >> >> >> >> >> > [email protected]. > >> >> >> >> >> >> > Visit this group at > >> >> >> >> >> >> > https://groups.google.com/group/votca. > >> >> >> >> >> >> > For more options, visit > >> >> >> >> >> >> > https://groups.google.com/d/optout. > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> -- > >> >> >> >> >> >> Christoph Junghans > >> >> >> >> >> >> Web: http://www.compphys.de > >> >> >> >> >> > > >> >> >> >> >> > -- > >> >> >> >> >> > You received this message because you are subscribed to > the > >> >> >> >> >> > Google > >> >> >> >> >> > Groups > >> >> >> >> >> > "votca" group. > >> >> >> >> >> > To unsubscribe from this group and stop receiving emails > >> >> >> >> >> > from > >> >> >> >> >> > it, > >> >> >> >> >> > send > >> >> >> >> >> > an > >> >> >> >> >> > email to [email protected]. > >> >> >> >> >> > To post to this group, send email to > [email protected]. > >> >> >> >> >> > Visit this group at https://groups.google.com/group/votca. > > >> >> >> >> >> > For more options, visit > https://groups.google.com/d/optout. > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> -- > >> >> >> >> >> Christoph Junghans > >> >> >> >> >> Web: http://www.compphys.de > >> >> >> >> > > >> >> >> >> > -- > >> >> >> >> > You received this message because you are subscribed to the > >> >> >> >> > Google > >> >> >> >> > Groups > >> >> >> >> > "votca" group. > >> >> >> >> > To unsubscribe from this group and stop receiving emails > from > >> >> >> >> > it, > >> >> >> >> > send > >> >> >> >> > an > >> >> >> >> > email to [email protected]. > >> >> >> >> > To post to this group, send email to [email protected]. > > >> >> >> >> > Visit this group at https://groups.google.com/group/votca. > >> >> >> >> > For more options, visit https://groups.google.com/d/optout. > >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Christoph Junghans > >> >> >> >> Web: http://www.compphys.de > >> >> >> > > >> >> >> > -- > >> >> >> > You received this message because you are subscribed to the > Google > >> >> >> > Groups > >> >> >> > "votca" group. > >> >> >> > To unsubscribe from this group and stop receiving emails from > it, > >> >> >> > send > >> >> >> > an > >> >> >> > email to [email protected]. > >> >> >> > To post to this group, send email to [email protected]. > >> >> >> > Visit this group at https://groups.google.com/group/votca. > >> >> >> > For more options, visit https://groups.google.com/d/optout. > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Christoph Junghans > >> >> >> Web: http://www.compphys.de > >> >> > > >> >> > -- > >> >> > You received this message because you are subscribed to the Google > >> >> > Groups > >> >> > "votca" group. > >> >> > To unsubscribe from this group and stop receiving emails from it, > >> >> > send > >> >> > an > >> >> > email to [email protected]. > >> >> > To post to this group, send email to [email protected]. > >> >> > Visit this group at https://groups.google.com/group/votca. > >> >> > For more options, visit https://groups.google.com/d/optout. > >> >> > >> >> > >> >> > >> >> -- > >> >> Christoph Junghans > >> >> Web: http://www.compphys.de > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > >> > Groups > >> > "votca" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send > >> > an > >> > email to [email protected]. > >> > To post to this group, send email to [email protected]. > >> > Visit this group at https://groups.google.com/group/votca. > >> > For more options, visit https://groups.google.com/d/optout. > >> > >> > >> > >> -- > >> Christoph Junghans > >> Web: http://www.compphys.de > > > > -- > > You received this message because you are subscribed to the Google > Groups > > "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send > an > > email to [email protected] <javascript:>. > > To post to this group, send email to [email protected] > <javascript:>. > > Visit this group at https://groups.google.com/group/votca. > > For more options, visit https://groups.google.com/d/optout. > > > > -- > Christoph Junghans > Web: http://www.compphys.de > -- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/votca. For more options, visit https://groups.google.com/d/optout.
