Dear Christoph
I got the same error even with -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON, and
same in gcc compiler.
GSL was chosen instead of MKL during the compile.
Takahiro
2017年10月27日金曜日 1時52分38秒 UTC+9 Christoph Junghans:
> 2017-10-26 4:02 GMT-06:00 Takahiro Ohkuma <[email protected]
> <javascript:>>:
> > Dear Christoph
> >
> > I put folders of "tools" and "csg" in a directory with build.sh and
> tried to
> > compile them with the --selfdownload option.
> > However, an error occurred in compiling the linalg.cc file.
> > The error is the following:
> > /home/ohkuma/cc/tools/votca/tools/src/libtools/linalg.cc(193): error: no
> > suitable user-defined conversion from "const
> > boost::numeric::ublas::unbounded_array<double, std::allocator<double>>"
> to
> > "const boost::numeric::ublas::vector<double,
> > boost::numeric::ublas::unbounded_array<double, std::allocator<double>>>"
> > exists
> > const ub::vector<double>& Aarray=A.data();
> > ^
> > /home/ohkuma/cc/tools/votca/tools/src/libtools/linalg.cc(194): error: no
> > suitable user-defined conversion from "const
> > boost::numeric::ublas::unbounded_array<double, std::allocator<double>>"
> to
> > "const boost::numeric::ublas::vector<double,
> > boost::numeric::ublas::unbounded_array<double, std::allocator<double>>>"
> > exists
> > const ub::vector<double>& Barray=B.data();
> >
> >
> > Intel compiler was used. But, I confirmed errors in the same lines of
> > linalg.cc in case of gcc compiler.
> > The log file is attached.
> Can you try to compile without mkl, i.e. with
> -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON?
>
> Christoph
> >
> > Thank you for your considerations.
> > Takahiro
> >
> >
> >
> > 2017年10月11日水曜日 0時24分16秒 UTC+9 Christoph Junghans:
> >>
> >> 2017-10-10 8:54 GMT-06:00 Takahiro Ohkuma <[email protected]>:
> >> > I need to install VOTCA on a computer (RedHat) which is not
> connecting
> >> > to
> >> > the internet. Could anyone tell me a way to manually install the
> >> > packages?
> >> > Thank you very much for your advice in advance.
> >> build.sh has the "--selfdownload" option, just put all the tarball,
> >> e.g. votca-tools-1.4.1.tar.gz, votca-csg-1.4.1.tar.gz, in same
> >> directory and run build.sh.
> >>
> >> Otherwise here are some hints on manual install:
> >> <https://github.com/votca/csg/wiki/Installing#manual-install>
> >>
> >> Christoph
> >> >
> >> > Takahiro
> >> >
> >> > --
> >> > You received this message because you are subscribed to the Google
> >> > Groups
> >> > "votca" group.
> >> > To unsubscribe from this group and stop receiving emails from it,
> send
> >> > an
> >> > email to [email protected].
> >> > To post to this group, send email to [email protected].
> >> > Visit this group at https://groups.google.com/group/votca.
> >> > For more options, visit https://groups.google.com/d/optout.
> >>
> >>
> >>
> >> --
> >> Christoph Junghans
> >> Web: http://www.compphys.de
> >
> > --
> > You received this message because you are subscribed to the Google
> Groups
> > "votca" group.
> > To unsubscribe from this group and stop receiving emails from it, send
> an
> > email to [email protected] <javascript:>.
> > To post to this group, send email to [email protected]
> <javascript:>.
> > Visit this group at https://groups.google.com/group/votca.
> > For more options, visit https://groups.google.com/d/optout.
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>
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Log of '/home/ohkuma/cc/tools/votca/./build.sh --selfdownload
--prefix=/home/ohkuma/cc/tools/votca -DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON
-DWITH_SQLITE3=off tools csg --log log'
[31;01mget_webversion: Could not fetch new version number[0m
[31;01mget_webversion: Could not fetch new version number[0m
[32;01mThis is VOTCA build.sh, version 2.1.6[0m
Install prefix is '/home/ohkuma/cc/tools/votca'
[34;01mUsing 17 jobs for make/ninja[0m
[32;01mWorking on tools[0m
[34;01mSource dir (tools) is already there - skipping checkout[0m
[34;01mcmake -DCMAKE_INSTALL_PREFIX='/home/ohkuma/cc/tools/votca'
-DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON -DWITH_SQLITE3=off
-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON /home/ohkuma/cc/tools/votca/tools[0m
-- The C compiler identification is Intel 14.0.0.20130728
-- The CXX compiler identification is Intel 14.0.0.20130728
-- Check for working C compiler:
/app/intel/icsxe_2013-R1/composer_xe_2013_sp1.0.080/bin/intel64/icc
-- Check for working C compiler:
/app/intel/icsxe_2013-R1/composer_xe_2013_sp1.0.080/bin/intel64/icc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler:
/app/intel/icsxe_2013-R1/composer_xe_2013_sp1.0.080/bin/intel64/icpc
-- Check for working CXX compiler:
/app/intel/icsxe_2013-R1/composer_xe_2013_sp1.0.080/bin/intel64/icpc -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.41.0
-- Found the following Boost libraries:
-- program_options
-- filesystem
-- system
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.23")
-- Found GSL: /usr/include (found version "1.13")
-- GSL found, overloading uBLAS prod()
-- Checking for module 'fftw3'
-- No package 'fftw3' found
-- Found FFTW3: /usr/lib64/libfftw3.so
-- Looking for fftw_plan_r2r_1d in /usr/lib64/libfftw3.so;
-- Looking for fftw_plan_r2r_1d in /usr/lib64/libfftw3.so; - found
-- Looking for assert.h
-- Looking for assert.h - found
-- Looking for math.h
-- Looking for math.h - found
-- Looking for stdio.h
-- Looking for stdio.h - found
-- Looking for stdlib.h
-- Looking for stdlib.h - found
-- Looking for string.h
-- Looking for string.h - found
-- Looking for C++ include cmath
-- Looking for C++ include cmath - found
-- Looking for C++ include fstream
-- Looking for C++ include fstream - found
-- Looking for C++ include functional
-- Looking for C++ include functional - found
-- Looking for C++ include iostream
-- Looking for C++ include iostream - found
-- Looking for C++ include limits
-- Looking for C++ include limits - found
-- Looking for C++ include list
-- Looking for C++ include list - found
-- Looking for C++ include map
-- Looking for C++ include map - found
-- Looking for C++ include ostream
-- Looking for C++ include ostream - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for C++ include stack
-- Looking for C++ include stack - found
-- Looking for C++ include stdexcept
-- Looking for C++ include stdexcept - found
-- Looking for C++ include string
-- Looking for C++ include string - found
-- Looking for C++ include vector
-- Looking for C++ include vector - found
-- Looking for sqrt in m
-- Looking for sqrt in m - found
-- Found EXPAT: /usr/lib64/libexpat.so (found version "2.0.1")
-- Performing Test HAVE_AIX
-- Performing Test HAVE_AIX - Failed
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
-- Configuring done
-- Generating done
-- Build files have been written to: /home/ohkuma/cc/tools/votca/tools/build
[32;01mcleaning tools[0m
[32;01mbuidling tools[0m
[ 0%] Built target votca_tools_manpages
[ 0%] Built target gitversion
Scanning dependencies of target votca_tools
[ 2%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o
[ 5%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o
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src/libtools/CMakeFiles/votca_tools.dir/application.cc.o
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src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o
[ 14%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o
[ 17%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o
[ 20%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o
[ 22%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o
[ 28%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o
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src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o
[ 37%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o
[ 37%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/matrix.cc.o
[ 37%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o
[ 42%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o
[ 42%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o
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src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o
[ 54%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/random.cc.o
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src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o
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[ 74%] Building CXX object src/libtools/CMakeFiles/votca_tools.dir/version.cc.o
/home/ohkuma/cc/tools/votca/tools/src/libtools/linalg.cc(193): error: no
suitable user-defined conversion from "const
boost::numeric::ublas::unbounded_array<double, std::allocator<double>>" to
"const boost::numeric::ublas::vector<double,
boost::numeric::ublas::unbounded_array<double, std::allocator<double>>>" exists
const ub::vector<double>& Aarray=A.data();
^
/home/ohkuma/cc/tools/votca/tools/src/libtools/linalg.cc(194): error: no
suitable user-defined conversion from "const
boost::numeric::ublas::unbounded_array<double, std::allocator<double>>" to
"const boost::numeric::ublas::vector<double,
boost::numeric::ublas::unbounded_array<double, std::allocator<double>>>" exists
const ub::vector<double>& Barray=B.data();
^
[ 77%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/cholesky.cc.o
compilation aborted for
/home/ohkuma/cc/tools/votca/tools/src/libtools/linalg.cc (code 2)
make[2]: *** [src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 80%] Building CXX object
src/libtools/CMakeFiles/votca_tools.dir/linalg/gsl/eigensystems.cc.o
make[1]: *** [src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
make: *** [all] Error 2
