On Tue, Feb 26, 2019 at 19:57 <[email protected]> wrote:
> Hello,
>
> I'm trying to install VOTCA on macOS Mojave 10.14.3 with GROMACS 2019.1
> (also tried 2016) using:
>
> cmake -DBUILD_CSGAPPS=ON -DCMAKE_INSTALL_PREFIX=${prefix} -DWITH_GMX=ON
> -DGROMACS_INCLUDE_DIR=/usr/local/gromacs/include
> -DGROMACS_LIBRARY=/usr/local/gromacs/lib/libgromacs_d.dylib ..
>
> but I get this error:
>
> ...
>
> [ 30%] Linking CXX shared library libvotca_tools.dylib
>
> ld: warning: ignoring file /Applications/VMD
> 1.9.4.app/Contents/vmd/libsqlite3.dylib, file was built for i386 which is
> not the architecture being linked (x86_64): /Applications/VMD
> 1.9.4.app/Contents/vmd/libsqlite3.dylib
>
>
This error says it all, the liqsqlite3 coming with vmd is 32-bit, but need
a 64-bit version!
Christoph
> Undefined symbols for architecture x86_64:
>
> "_sqlite3_bind_double", referenced from:
>
> void votca::tools::Statement::Bind<double>(int, double const&) in
> statement.cc.o
>
> "_sqlite3_bind_int", referenced from:
>
> void votca::tools::Statement::Bind<int>(int, int const&) in
> statement.cc.o
>
> "_sqlite3_bind_text", referenced from:
>
> void votca::tools::Statement::Bind<std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> > >(int,
> std::__1::basic_string<char, std::__1::char_traits<char>,
> std::__1::allocator<char> > const&) in statement.cc.o
>
> "_sqlite3_close", referenced from:
>
> votca::tools::Database::~Database() in database.cc.o
>
> votca::tools::Database::Close() in database.cc.o
>
> votca::tools::Database::~Database() in database.cc.o
>
> "_sqlite3_column_double", referenced from:
>
> double votca::tools::Statement::Column<double>(int) in statement.cc.o
>
> "_sqlite3_column_int", referenced from:
>
> int votca::tools::Statement::Column<int>(int) in statement.cc.o
>
> "_sqlite3_column_text", referenced from:
>
> std::__1::basic_string<char, std::__1::char_traits<char>,
> std::__1::allocator<char> >
> votca::tools::Statement::Column<std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> > >(int) in
> statement.cc.o
>
> "_sqlite3_exec", referenced from:
>
> votca::tools::Database::Exec(std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> >) in database.cc.o
>
> "_sqlite3_finalize", referenced from:
>
> votca::tools::Statement::~Statement() in statement.cc.o
>
> votca::tools::Statement::~Statement() in statement.cc.o
>
> "_sqlite3_last_insert_rowid", referenced from:
>
> votca::tools::Database::LastInsertRowId() in database.cc.o
>
> "_sqlite3_open_v2", referenced from:
>
> votca::tools::Database::Open(std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> >, int) in
> database.cc.o
>
> votca::tools::Database::OpenHelper(std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> >) in database.cc.o
>
> "_sqlite3_prepare_v2", referenced from:
>
> votca::tools::Database::Prepare(std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> >) in database.cc.o
>
> "_sqlite3_reset", referenced from:
>
> votca::tools::Statement::Reset() in statement.cc.o
>
> "_sqlite3_step", referenced from:
>
> votca::tools::Statement::Step() in statement.cc.o
>
> ld: symbol(s) not found for architecture x86_64
>
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
>
> make[2]: *** [tools/src/libtools/libvotca_tools.6.dylib] Error 1
>
> make[1]: *** [tools/src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
>
> make: *** [all] Error 2
>
> [ 0%] Built target votca_tools_manpages
>
> Current git revision is 7e20a28
>
> [ 0%] Built target gitversion
>
> [ 1%] Linking CXX shared library libvotca_tools.dylib
>
> ld: warning: ignoring file /Applications/VMD
> 1.9.4.app/Contents/vmd/libsqlite3.dylib, file was built for i386 which is
> not the architecture being linked (x86_64): /Applications/VMD
> 1.9.4.app/Contents/vmd/libsqlite3.dylib
>
> Undefined symbols for architecture x86_64:
>
> "_sqlite3_bind_double", referenced from:
>
> void votca::tools::Statement::Bind<double>(int, double const&) in
> statement.cc.o
>
> "_sqlite3_bind_int", referenced from:
>
> void votca::tools::Statement::Bind<int>(int, int const&) in
> statement.cc.o
>
> "_sqlite3_bind_text", referenced from:
>
> void votca::tools::Statement::Bind<std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> > >(int,
> std::__1::basic_string<char, std::__1::char_traits<char>,
> std::__1::allocator<char> > const&) in statement.cc.o
>
> "_sqlite3_close", referenced from:
>
> votca::tools::Database::~Database() in database.cc.o
>
> votca::tools::Database::Close() in database.cc.o
>
> votca::tools::Database::~Database() in database.cc.o
>
> "_sqlite3_column_double", referenced from:
>
> double votca::tools::Statement::Column<double>(int) in statement.cc.o
>
> "_sqlite3_column_int", referenced from:
>
> int votca::tools::Statement::Column<int>(int) in statement.cc.o
>
> "_sqlite3_column_text", referenced from:
>
> std::__1::basic_string<char, std::__1::char_traits<char>,
> std::__1::allocator<char> >
> votca::tools::Statement::Column<std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> > >(int) in
> statement.cc.o
>
> "_sqlite3_exec", referenced from:
>
> votca::tools::Database::Exec(std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> >) in database.cc.o
>
> "_sqlite3_finalize", referenced from:
>
> votca::tools::Statement::~Statement() in statement.cc.o
>
> votca::tools::Statement::~Statement() in statement.cc.o
>
> "_sqlite3_last_insert_rowid", referenced from:
>
> votca::tools::Database::LastInsertRowId() in database.cc.o
>
> "_sqlite3_open_v2", referenced from:
>
> votca::tools::Database::Open(std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> >, int) in
> database.cc.o
>
> votca::tools::Database::OpenHelper(std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> >) in database.cc.o
>
> "_sqlite3_prepare_v2", referenced from:
>
> votca::tools::Database::Prepare(std::__1::basic_string<char,
> std::__1::char_traits<char>, std::__1::allocator<char> >) in database.cc.o
>
> "_sqlite3_reset", referenced from:
>
> votca::tools::Statement::Reset() in statement.cc.o
>
> "_sqlite3_step", referenced from:
>
> votca::tools::Statement::Step() in statement.cc.o
>
> ld: symbol(s) not found for architecture x86_64
>
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
>
> make[2]: *** [tools/src/libtools/libvotca_tools.6.dylib] Error 1
>
> make[1]: *** [tools/src/libtools/CMakeFiles/votca_tools.dir/all] Error 2
>
> make: *** [all] Error 2
>
> Thanks,
>
> Ramón González-Pérez
>
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>
--
Christoph Junghans
Web: http://www.compphys.de
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