The output is a loop of this message (can't cancel using ctrl + C): dyld: Library not loaded: @rpath/libvotca_csg.6.dylib
Referenced from: /Users/ramongonzalezperez/VOTCA/bin/csg_property Reason: image not found /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh: line 181: 16817 Abort trap: 6 "$@" Callstack: /Users/ramongonzalezperez/VOTCA/bin/csg_call - linenumber 165 csg_get_property - linenumber 338 in /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh critical - linenumber 187 in /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh die - linenumber 109 in /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh ^[[31;01m###################################################################################################### # # # ERROR: # # critical: 'csg_property --file settings.xml --path cg.inverse.scriptpath --short --print .' failed # # Details can be found above # # # ######################################################################################################^[[0m csg_get_property: No value for 'cg.inverse.scriptpath' found in settings.xml, trying /Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml dyld: Library not loaded: @rpath/libvotca_csg.6.dylib Referenced from: /Users/ramongonzalezperez/VOTCA/bin/csg_property Reason: image not found /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh: line 181: 16825 Abort trap: 6 "$@" Callstack: /Users/ramongonzalezperez/VOTCA/bin/csg_call - linenumber 165 csg_get_property - linenumber 344 in /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh critical - linenumber 187 in /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh die - linenumber 109 in /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh ^[[31;01m########################################################################################################################################################## # # # ERROR: # # critical: 'csg_property --file /Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml --path cg.inverse.scriptpath --short --print .' failed # # Details can be found above # # # ##########################################################################################################################################################^[[0m On Tuesday, March 19, 2019 at 9:47:29 PM UTC-6, Christoph Junghans wrote: > > Let's try to run the last command separately: > csg_call --options settings.xml function csg_get_property > cg.inverse.log_file > and post the output. > > Christoph > > On Tue, Mar 19, 2019 at 9:05 PM <gonzale...@licifug.ugto.mx <javascript:>> > wrote: > > > > running csg_inverse --options "settings.xml" > > > > + [[ --options = \-\-\h\e\l\p ]] > > > > + source > /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/start_framework.sh > > > > > > ++ '[' --options = --help ']' > > > > ++ [[ -n /Users/ramongonzalezperez/VOTCA/share/votca ]] > > > > ++ [[ -d /Users/ramongonzalezperez/VOTCA/share/votca ]] > > > > ++ [[ -d /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > ++ [[ -f > /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/inverse.sh ]] > > > > ++ [[ -f > /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh > > ]] > > > > ++ source > /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh > > > > > > +++ [[ --options = \-\-\h\e\l\p ]] > > > > +++ export BASH > > > > +++ shopt -s extglob > > > > +++ export -f msg > > > > +++ export -f show_callstack > > > > +++ unset -f die > > > > +++ export -f die > > > > +++ export -f cat_external > > > > +++ export -f do_external > > > > +++ export -f critical > > > > +++ export -f for_all > > > > +++ export -f csg_get_interaction_property > > > > +++ export -f csg_get_property > > > > +++ export -f trim_all > > > > +++ export -f mark_done > > > > +++ export -f is_done > > > > +++ export -f is_int > > > > +++ export -f to_int > > > > +++ export -f is_part > > > > +++ export -f has_duplicate > > > > +++ export -f remove_duplicate > > > > +++ export -f is_num > > > > +++ export -f get_stepname > > > > +++ export -f update_stepnames > > > > +++ export -f get_current_step_dir > > > > +++ export -f get_last_step_dir > > > > +++ export -f get_main_dir > > > > +++ export -f get_current_step_nr > > > > +++ export -f get_step_nr > > > > +++ export -f cp_from_main_dir > > > > +++ export -f cp_from_last_step > > > > +++ export -f get_time > > > > +++ export -f get_number_tasks > > > > +++ export -f get_table_comment > > > > +++ export -f csg_inverse_clean > > > > +++ export -f check_path_variable > > > > +++ export -f add_to_csgshare > > > > +++ export -f globalize_dir > > > > +++ export -f globalize_file > > > > +++ export -f source_function > > > > +++ export -f csg_banner > > > > +++ export -f csg_calc > > > > +++ export -f show_csg_tables > > > > +++ export -f get_command_from_csg_tables > > > > +++ export -f source_wrapper > > > > +++ export -f find_in_csgshare > > > > ++++ type -p mktemp > > > > +++ '[' -z /usr/bin/mktemp ']' > > > > +++ export -f enable_logging > > > > +++ export -f get_restart_file > > > > +++ export -f check_for_obsolete_xml_options > > > > +++ export -f command_not_found_handle > > > > +++ for i in simulation_finish checkpoint_exist get_simulation_setting > > > > +++ eval 'simulation_finish()' '{' command_not_found_handle > 'simulation_finish;' '}' > > > > +++ eval export -f simulation_finish > > > > ++++ export -f simulation_finish > > > > +++ for i in simulation_finish checkpoint_exist get_simulation_setting > > > > +++ eval 'checkpoint_exist()' '{' command_not_found_handle > 'checkpoint_exist;' '}' > > > > +++ eval export -f checkpoint_exist > > > > ++++ export -f checkpoint_exist > > > > +++ for i in simulation_finish checkpoint_exist get_simulation_setting > > > > +++ eval 'get_simulation_setting()' '{' command_not_found_handle > 'get_simulation_setting;' '}' > > > > +++ eval export -f get_simulation_setting > > > > ++++ export -f get_simulation_setting > > > > +++ unset i > > > > ++ export CSG_MASTER_PID=67692 > > > > ++ CSG_MASTER_PID=67692 > > > > ++ export > CSG_MAINDIR=/Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all > > > > ++ > CSG_MAINDIR=/Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all > > > > ++ [[ -n '' ]] > > > > ++ export > VOTCA_CSG_DEFAULTS=/Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml > > > > > > ++ > VOTCA_CSG_DEFAULTS=/Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml > > > > > > ++ [[ -f > /Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml ]] > > > > ++ add_to_csgshare --at-the-end > /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ local dir end=no > > > > ++ [[ --at-the-end = \-\-\a\t\-\t\h\e\-\e\n\d ]] > > > > ++ end=yes > > > > ++ shift > > > > ++ [[ -z /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > ++ for dirlist in '"$@"' > > > > ++ old_IFS=' > > > > ' > > > > ++ IFS=: > > > > ++ for dir in '$dirlist' > > > > ++ eval dir=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > +++ dir=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ [[ -d /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > +++ globalize_dir > /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > +++ [[ -z /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > +++ [[ -d /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > +++ cd /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > +++ pwd > > > > ++ dir=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ [[ yes = \y\e\s ]] > > > > ++ export > CSGSHARE=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ CSGSHARE=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ export > PERL5LIB=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ PERL5LIB=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ export > PYTHONPATH=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ > PYTHONPATH=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse > > > > ++ IFS=' > > > > ' > > > > ++ check_path_variable CSGSHARE PERL5LIB PYTHONPATH > > > > ++ local old_IFS dir > > > > ++ [[ -z CSGSHARE ]] > > > > ++ for var in '"$@"' > > > > ++ [[ -z CSGSHARE ]] > > > > ++ old_IFS=' > > > > ' > > > > ++ IFS=: > > > > ++ for dir in '${!var}' > > > > ++ [[ -z /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > ++ [[ /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse = > *votca* ]] > > > > ++ [[ -d /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > ++ IFS=' > > > > ' > > > > ++ for var in '"$@"' > > > > ++ [[ -z PERL5LIB ]] > > > > ++ old_IFS=' > > > > ' > > > > ++ IFS=: > > > > ++ for dir in '${!var}' > > > > ++ [[ -z /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > ++ [[ /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse = > *votca* ]] > > > > ++ [[ -d /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > ++ IFS=' > > > > ' > > > > ++ for var in '"$@"' > > > > ++ [[ -z PYTHONPATH ]] > > > > ++ old_IFS=' > > > > ' > > > > ++ IFS=: > > > > ++ for dir in '${!var}' > > > > ++ [[ -z /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > ++ [[ /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse = > *votca* ]] > > > > ++ [[ -d /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]] > > > > ++ IFS=' > > > > ' > > > > + do_iterations= > > > > + waittime=10 > > > > + unset CSGXMLFILE CSGENDING CSGDEBUG > > > > + shopt -s extglob > > > > + [[ -options != --options ]] > > > > + [[ options = --options ]] > > > > + case $1 in > > > > + CSGXMLFILE=settings.xml > > > > + [[ -f settings.xml ]] > > > > ++ globalize_file settings.xml > > > > ++ [[ -z settings.xml ]] > > > > ++ [[ -f settings.xml ]] > > > > ++ local dir > > > > ++ [[ settings.xml = settings.xml ]] > > > > ++ dir=. > > > > +++ globalize_dir . > > > > +++ [[ -z . ]] > > > > +++ [[ -d . ]] > > > > +++ cd . > > > > +++ pwd > > > > ++ echo > /Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all/settings.xml > > > > + export > CSGXMLFILE=/Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all/settings.xml > > > > > > + > CSGXMLFILE=/Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all/settings.xml > > > > > > + shift 2 > > > > + [[ -debug != --debug ]] > > > > + [[ debug = --debug ]] > > > > + case $1 in > > > > + export CSGDEBUG=yes > > > > + CSGDEBUG=yes > > > > + shift > > > > + [[ '' != '' ]] > > > > + [[ -z > /Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all/settings.xml > ]] > > > > + [[ '' = \c\l\e\a\n ]] > > > > + enable_logging > > > > + local log > > > > + [[ -z '' ]] > > > > ++ csg_get_property cg.inverse.log_file > > > > ./run.sh: line 4: 67692 Terminated: 15 csg_inverse --options > settings.xml --debug > > > > > > On Tuesday, March 19, 2019 at 8:59:31 PM UTC-6, Christoph Junghans > wrote: > >> > >> On Tue, Mar 19, 2019 at 6:52 PM <gonzale...@licifug.ugto.mx> wrote: > >> > > >> > Yes, I sourced using > >> > > >> > source votca/bin/VOTCARC.bash > >> > > >> > The version is 1.6-dev. > >> Try to add "--debug" to csg_inverse call and post the output here. > >> > >> Christoph > >> > > >> > On Tuesday, March 19, 2019 at 5:49:18 PM UTC-6, Christoph Junghans > wrote: > >> >> > >> >> On Tue, Mar 19, 2019 at 5:32 PM <gonzale...@licifug.ugto.mx> wrote: > >> >> > > >> >> > Hello, > >> >> > > >> >> > I get this output when I execute csg_inverse: > >> >> > > >> >> > running csg_inverse --options "settings.xml" > >> >> > > >> >> > ./run.sh: line 4: 42366 Terminated: 15 csg_inverse > --options settings.xml > >> >> > > >> >> > > >> >> > What could be the problem? > >> >> What version of VOTCA is this? > >> >> Did you source VOTCARC? > >> >> > >> >> Christoph > >> >> > > >> >> > -- > >> >> > You received this message because you are subscribed to the Google > Groups "votca" group. > >> >> > To unsubscribe from this group and stop receiving emails from it, > send an email to votca+un...@googlegroups.com. > >> >> > To post to this group, send email to vo...@googlegroups.com. > >> >> > Visit this group at https://groups.google.com/group/votca. > >> >> > For more options, visit https://groups.google.com/d/optout. > >> >> > >> >> > >> >> > >> >> -- > >> >> Christoph Junghans > >> >> Web: http://www.compphys.de > >> > > >> > -- > >> > You received this message because you are subscribed to the Google > Groups "votca" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to votca+un...@googlegroups.com. > >> > To post to this group, send email to vo...@googlegroups.com. > >> > Visit this group at https://groups.google.com/group/votca. > >> > For more options, visit https://groups.google.com/d/optout. > >> > >> > >> > >> -- > >> Christoph Junghans > >> Web: http://www.compphys.de > > > > -- > > You received this message because you are subscribed to the Google > Groups "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to votca+un...@googlegroups.com <javascript:>. > > To post to this group, send email to vo...@googlegroups.com > <javascript:>. > > Visit this group at https://groups.google.com/group/votca. > > For more options, visit https://groups.google.com/d/optout. > > > > -- > Christoph Junghans > Web: http://www.compphys.de > -- You received this message because you are subscribed to the Google Groups "votca" group. 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