Hello,
I double checked and I have been sourced both .bash correctly, I even added
to my bash_profile:
source votca/bin/VOTCARC.bash
source /usr/local/gromacs/bin/GMXRC.bash
I've tried it on another computer (macOS High Sierra) and the 'csg_property
--help' option works but the 'csg_inverse' command also gives:
run.sh: line 4: 96084 Terminated: 15 csg_inverse --options
settings.xml
The output of 'csg_call --options settings.xml function csg_get_property
cg.inverse.log_file' is also a loop message that can't be be cancel using
ctrl + C and starts with:
dyld: Library not loaded: @rpath/libvotca_csg.6.dylib
This is the script I'm using to install VOTCA (I have tried v1.4.1, stable
and master versions):
sudo rm -rf /usr/local/votca
prefix=/usr/local/votca
version=v1.4.1
git clone -b ${version} --recursive https://github.com/votca/votca.git
cd votca
mkdir build
cd build
cmake -DBUILD_CSGAPPS=ON -DCMAKE_INSTALL_PREFIX=${prefix} -DWITH_GMX=ON
-DGROMACS_INCLUDE_DIR=/usr/local/gromacs/include
-DGROMACS_LIBRARY=/usr/local/gromacs/lib/libgromacs.dylib
-DEIGEN3_INCLUDE_DIR=/usr/local/Cellar/eigen/3.3.5/include/eigen3
-DCMAKE_DISABLE_FIND_PACKAGE_MKL=ON ..
sudo make -j5
sudo make install
source votca/bin/VOTCARC.bash
On Wednesday, March 20, 2019 at 8:36:15 AM UTC-6, Christoph Junghans wrote:
> That is strange, now is says:
> dyld: Library not loaded: @loader_path/../lib/libgromacs_d.4.dylib
> Referenced from: /Users/ramongonzalezperez/VOTCA/bin/csg_property
> Reason: image not found
>
> Before is said:
> dyld: Library not loaded: @rpath/libvotca_csg.6.dylib
> Referenced from: /Users/ramongonzalezperez/VOTCA/bin/csg_property
> Reason: image not found
>
> I am not 100% sure what you changed in your environment, but it seems
> you hadn't sourced VOTCARC.bash before.
>
> Anyhow, I think now you forgot to source Gromacs' GMXRC.bash, you need
> to source both, VOTCARC.bash and GMXRC.bash.
>
> Christoph
>
>
> On Wed, Mar 20, 2019 at 8:14 AM <[email protected] <javascript:>>
> wrote:
> >
> > Here's the output when I run csg_property --help:
> >
> > dyld: Library not loaded: @loader_path/../lib/libgromacs_d.4.dylib
> >
> > Referenced from: /Users/ramongonzalezperez/VOTCA/bin/csg_property
> >
> > Reason: image not found
> >
> > Abort trap: 6
> >
> >
> > The content of my VOTCARC:
> >
> > #!/usr/bin/env bash
> >
> > #
> >
> > # Copyright 2009-2017 The VOTCA Development Team (http://www.votca.org)
> >
> > #
> >
> > # Licensed under the Apache License, Version 2.0 (the "License");
> >
> > # you may not use this file except in compliance with the License.
> >
> > # You may obtain a copy of the License at
> >
> > #
> >
> > # http://www.apache.org/licenses/LICENSE-2.0
> >
> > #
> >
> > # Unless required by applicable law or agreed to in writing, software
> >
> > # distributed under the License is distributed on an "AS IS" BASIS,
> >
> > # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
> implied.
> >
> > # See the License for the specific language governing permissions and
> >
> > # limitations under the License.
> >
> > #
> >
> >
> > #path is never empty
> >
> > PATH="/Users/ramongonzalezperez/VOTCA/bin:${PATH}"
> >
> > #debian wants to have : at the end
> >
> > MANPATH="/Users/ramongonzalezperez/VOTCA/share/man:${MANPATH}"
> >
> >
> DYLD_LIBRARY_PATH="/Users/ramongonzalezperez/VOTCA/lib${DYLD_LIBRARY_PATH:+:}${DYLD_LIBRARY_PATH}"
>
>
> >
> >
> PKG_CONFIG_PATH="/Users/ramongonzalezperez/VOTCA/lib/pkgconfig${PKG_CONFIG_PATH:+:}${PKG_CONFIG_PATH}"
>
>
> >
> >
> > VOTCASHARE="/Users/ramongonzalezperez/VOTCA/share/votca"
> >
> >
> > export PATH MANPATH DYLD_LIBRARY_PATH PKG_CONFIG_PATH VOTCASHARE
> >
> >
> > #votca rc files
> >
> > for rc in "${VOTCASHARE}"/rc/*rc.bash; do
> >
> > [ -r "$rc" ] && . "$rc"
> >
> > done
> >
> > unset rc
> >
> >
> > #bash completion
> >
> > if [ -n "$BASH_VERSION" ]; then
> >
> > for comp in "${VOTCASHARE}"/rc/*completion.bash; do
> >
> > [ -r "$comp" ] && source "$comp"
> >
> > done
> >
> > unset comp
> >
> > fi
> >
> >
> > And when I do the otool:
> >
> >
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/objdump:
>
> 'csg_property': No such file or directory
> >
> >
> > On Wednesday, March 20, 2019 at 7:47:26 AM UTC-6, Christoph Junghans
> wrote:
> >>
> >> My guess is that.
> >> > dyld: Library not loaded: @rpath/libvotca_csg.6.dylib
> >> is the core of the problem.
> >>
> >> Can you try to run "csg_property --help" to check if it fails, too?
> >> Additionally, can you post the content of your VOTCARC? ("cat
> VOTCARC.bash")
> >> And do a "otool -l csg_property" as well.
> >>
> >> Christoph
> >>
> >> On Tue, Mar 19, 2019 at 11:21 PM <[email protected]> wrote:
> >> >
> >> > The output is a loop of this message (can't cancel using ctrl + C):
> >> >
> >> > dyld: Library not loaded: @rpath/libvotca_csg.6.dylib
> >> >
> >> > Referenced from: /Users/ramongonzalezperez/VOTCA/bin/csg_property
> >> >
> >> > Reason: image not found
> >> >
> >> >
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh:
>
> line 181: 16817 Abort trap: 6 "$@"
> >> >
> >> >
> >> > Callstack:
> >> >
> >> > /Users/ramongonzalezperez/VOTCA/bin/csg_call - linenumber 165
> >> >
> >> > csg_get_property - linenumber 338 in
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh
>
>
> >> >
> >> > critical - linenumber 187 in
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh
>
>
> >> >
> >> > die - linenumber 109 in
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh
>
>
> >> >
> >> >
> ^[[31;01m######################################################################################################
>
>
> >> >
> >> > #
> #
> >> >
> >> > # ERROR:
> #
> >> >
> >> > # critical: 'csg_property --file settings.xml --path
> cg.inverse.scriptpath --short --print .' failed #
> >> >
> >> > # Details can be found above
> #
> >> >
> >> > #
> #
> >> >
> >> >
> ######################################################################################################^[[0m
>
>
> >> >
> >> > csg_get_property: No value for 'cg.inverse.scriptpath' found in
> settings.xml, trying
> /Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml
> >> >
> >> > dyld: Library not loaded: @rpath/libvotca_csg.6.dylib
> >> >
> >> > Referenced from: /Users/ramongonzalezperez/VOTCA/bin/csg_property
> >> >
> >> > Reason: image not found
> >> >
> >> >
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh:
>
> line 181: 16825 Abort trap: 6 "$@"
> >> >
> >> >
> >> > Callstack:
> >> >
> >> > /Users/ramongonzalezperez/VOTCA/bin/csg_call - linenumber 165
> >> >
> >> > csg_get_property - linenumber 344 in
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh
>
>
> >> >
> >> > critical - linenumber 187 in
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh
>
>
> >> >
> >> > die - linenumber 109 in
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh
>
>
> >> >
> >> >
> ^[[31;01m##########################################################################################################################################################
>
>
> >> >
> >> > #
>
> #
> >> >
> >> > # ERROR:
>
> #
> >> >
> >> > # critical: 'csg_property --file
> /Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml --path
> cg.inverse.scriptpath --short --print .' failed #
> >> >
> >> > # Details can be found above
>
> #
> >> >
> >> > #
>
> #
> >> >
> >> >
> ##########################################################################################################################################################^[[0m
>
>
> >> >
> >> >
> >> > On Tuesday, March 19, 2019 at 9:47:29 PM UTC-6, Christoph Junghans
> wrote:
> >> >>
> >> >> Let's try to run the last command separately:
> >> >> csg_call --options settings.xml function csg_get_property
> cg.inverse.log_file
> >> >> and post the output.
> >> >>
> >> >> Christoph
> >> >>
> >> >> On Tue, Mar 19, 2019 at 9:05 PM <[email protected]> wrote:
> >> >> >
> >> >> > running csg_inverse --options "settings.xml"
> >> >> >
> >> >> > + [[ --options = \-\-\h\e\l\p ]]
> >> >> >
> >> >> > + source
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/start_framework.sh
>
>
> >> >> >
> >> >> > ++ '[' --options = --help ']'
> >> >> >
> >> >> > ++ [[ -n /Users/ramongonzalezperez/VOTCA/share/votca ]]
> >> >> >
> >> >> > ++ [[ -d /Users/ramongonzalezperez/VOTCA/share/votca ]]
> >> >> >
> >> >> > ++ [[ -d
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > ++ [[ -f
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/inverse.sh ]]
> >> >> >
> >> >> > ++ [[ -f
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh
>
> ]]
> >> >> >
> >> >> > ++ source
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse/functions_common.sh
>
>
> >> >> >
> >> >> > +++ [[ --options = \-\-\h\e\l\p ]]
> >> >> >
> >> >> > +++ export BASH
> >> >> >
> >> >> > +++ shopt -s extglob
> >> >> >
> >> >> > +++ export -f msg
> >> >> >
> >> >> > +++ export -f show_callstack
> >> >> >
> >> >> > +++ unset -f die
> >> >> >
> >> >> > +++ export -f die
> >> >> >
> >> >> > +++ export -f cat_external
> >> >> >
> >> >> > +++ export -f do_external
> >> >> >
> >> >> > +++ export -f critical
> >> >> >
> >> >> > +++ export -f for_all
> >> >> >
> >> >> > +++ export -f csg_get_interaction_property
> >> >> >
> >> >> > +++ export -f csg_get_property
> >> >> >
> >> >> > +++ export -f trim_all
> >> >> >
> >> >> > +++ export -f mark_done
> >> >> >
> >> >> > +++ export -f is_done
> >> >> >
> >> >> > +++ export -f is_int
> >> >> >
> >> >> > +++ export -f to_int
> >> >> >
> >> >> > +++ export -f is_part
> >> >> >
> >> >> > +++ export -f has_duplicate
> >> >> >
> >> >> > +++ export -f remove_duplicate
> >> >> >
> >> >> > +++ export -f is_num
> >> >> >
> >> >> > +++ export -f get_stepname
> >> >> >
> >> >> > +++ export -f update_stepnames
> >> >> >
> >> >> > +++ export -f get_current_step_dir
> >> >> >
> >> >> > +++ export -f get_last_step_dir
> >> >> >
> >> >> > +++ export -f get_main_dir
> >> >> >
> >> >> > +++ export -f get_current_step_nr
> >> >> >
> >> >> > +++ export -f get_step_nr
> >> >> >
> >> >> > +++ export -f cp_from_main_dir
> >> >> >
> >> >> > +++ export -f cp_from_last_step
> >> >> >
> >> >> > +++ export -f get_time
> >> >> >
> >> >> > +++ export -f get_number_tasks
> >> >> >
> >> >> > +++ export -f get_table_comment
> >> >> >
> >> >> > +++ export -f csg_inverse_clean
> >> >> >
> >> >> > +++ export -f check_path_variable
> >> >> >
> >> >> > +++ export -f add_to_csgshare
> >> >> >
> >> >> > +++ export -f globalize_dir
> >> >> >
> >> >> > +++ export -f globalize_file
> >> >> >
> >> >> > +++ export -f source_function
> >> >> >
> >> >> > +++ export -f csg_banner
> >> >> >
> >> >> > +++ export -f csg_calc
> >> >> >
> >> >> > +++ export -f show_csg_tables
> >> >> >
> >> >> > +++ export -f get_command_from_csg_tables
> >> >> >
> >> >> > +++ export -f source_wrapper
> >> >> >
> >> >> > +++ export -f find_in_csgshare
> >> >> >
> >> >> > ++++ type -p mktemp
> >> >> >
> >> >> > +++ '[' -z /usr/bin/mktemp ']'
> >> >> >
> >> >> > +++ export -f enable_logging
> >> >> >
> >> >> > +++ export -f get_restart_file
> >> >> >
> >> >> > +++ export -f check_for_obsolete_xml_options
> >> >> >
> >> >> > +++ export -f command_not_found_handle
> >> >> >
> >> >> > +++ for i in simulation_finish checkpoint_exist
> get_simulation_setting
> >> >> >
> >> >> > +++ eval 'simulation_finish()' '{' command_not_found_handle
> 'simulation_finish;' '}'
> >> >> >
> >> >> > +++ eval export -f simulation_finish
> >> >> >
> >> >> > ++++ export -f simulation_finish
> >> >> >
> >> >> > +++ for i in simulation_finish checkpoint_exist
> get_simulation_setting
> >> >> >
> >> >> > +++ eval 'checkpoint_exist()' '{' command_not_found_handle
> 'checkpoint_exist;' '}'
> >> >> >
> >> >> > +++ eval export -f checkpoint_exist
> >> >> >
> >> >> > ++++ export -f checkpoint_exist
> >> >> >
> >> >> > +++ for i in simulation_finish checkpoint_exist
> get_simulation_setting
> >> >> >
> >> >> > +++ eval 'get_simulation_setting()' '{' command_not_found_handle
> 'get_simulation_setting;' '}'
> >> >> >
> >> >> > +++ eval export -f get_simulation_setting
> >> >> >
> >> >> > ++++ export -f get_simulation_setting
> >> >> >
> >> >> > +++ unset i
> >> >> >
> >> >> > ++ export CSG_MASTER_PID=67692
> >> >> >
> >> >> > ++ CSG_MASTER_PID=67692
> >> >> >
> >> >> > ++ export
> CSG_MAINDIR=/Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all
> >> >> >
> >> >> > ++
> CSG_MAINDIR=/Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all
> >> >> >
> >> >> > ++ [[ -n '' ]]
> >> >> >
> >> >> > ++ export
> VOTCA_CSG_DEFAULTS=/Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml
>
>
> >> >> >
> >> >> > ++
> VOTCA_CSG_DEFAULTS=/Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml
>
>
> >> >> >
> >> >> > ++ [[ -f
> /Users/ramongonzalezperez/VOTCA/share/votca/xml/csg_defaults.xml ]]
> >> >> >
> >> >> > ++ add_to_csgshare --at-the-end
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++ local dir end=no
> >> >> >
> >> >> > ++ [[ --at-the-end = \-\-\a\t\-\t\h\e\-\e\n\d ]]
> >> >> >
> >> >> > ++ end=yes
> >> >> >
> >> >> > ++ shift
> >> >> >
> >> >> > ++ [[ -z
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > ++ for dirlist in '"$@"'
> >> >> >
> >> >> > ++ old_IFS='
> >> >> >
> >> >> > '
> >> >> >
> >> >> > ++ IFS=:
> >> >> >
> >> >> > ++ for dir in '$dirlist'
> >> >> >
> >> >> > ++ eval
> dir=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > +++
> dir=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++ [[ -d
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > +++ globalize_dir
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > +++ [[ -z
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > +++ [[ -d
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > +++ cd /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > +++ pwd
> >> >> >
> >> >> > ++ dir=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++ [[ yes = \y\e\s ]]
> >> >> >
> >> >> > ++ export
> CSGSHARE=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++
> CSGSHARE=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++ export
> PERL5LIB=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++
> PERL5LIB=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++ export
> PYTHONPATH=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++
> PYTHONPATH=/Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> >> >> >
> >> >> > ++ IFS='
> >> >> >
> >> >> > '
> >> >> >
> >> >> > ++ check_path_variable CSGSHARE PERL5LIB PYTHONPATH
> >> >> >
> >> >> > ++ local old_IFS dir
> >> >> >
> >> >> > ++ [[ -z CSGSHARE ]]
> >> >> >
> >> >> > ++ for var in '"$@"'
> >> >> >
> >> >> > ++ [[ -z CSGSHARE ]]
> >> >> >
> >> >> > ++ old_IFS='
> >> >> >
> >> >> > '
> >> >> >
> >> >> > ++ IFS=:
> >> >> >
> >> >> > ++ for dir in '${!var}'
> >> >> >
> >> >> > ++ [[ -z
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > ++ [[ /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> = *votca* ]]
> >> >> >
> >> >> > ++ [[ -d
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > ++ IFS='
> >> >> >
> >> >> > '
> >> >> >
> >> >> > ++ for var in '"$@"'
> >> >> >
> >> >> > ++ [[ -z PERL5LIB ]]
> >> >> >
> >> >> > ++ old_IFS='
> >> >> >
> >> >> > '
> >> >> >
> >> >> > ++ IFS=:
> >> >> >
> >> >> > ++ for dir in '${!var}'
> >> >> >
> >> >> > ++ [[ -z
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > ++ [[ /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> = *votca* ]]
> >> >> >
> >> >> > ++ [[ -d
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > ++ IFS='
> >> >> >
> >> >> > '
> >> >> >
> >> >> > ++ for var in '"$@"'
> >> >> >
> >> >> > ++ [[ -z PYTHONPATH ]]
> >> >> >
> >> >> > ++ old_IFS='
> >> >> >
> >> >> > '
> >> >> >
> >> >> > ++ IFS=:
> >> >> >
> >> >> > ++ for dir in '${!var}'
> >> >> >
> >> >> > ++ [[ -z
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > ++ [[ /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse
> = *votca* ]]
> >> >> >
> >> >> > ++ [[ -d
> /Users/ramongonzalezperez/VOTCA/share/votca/scripts/inverse ]]
> >> >> >
> >> >> > ++ IFS='
> >> >> >
> >> >> > '
> >> >> >
> >> >> > + do_iterations=
> >> >> >
> >> >> > + waittime=10
> >> >> >
> >> >> > + unset CSGXMLFILE CSGENDING CSGDEBUG
> >> >> >
> >> >> > + shopt -s extglob
> >> >> >
> >> >> > + [[ -options != --options ]]
> >> >> >
> >> >> > + [[ options = --options ]]
> >> >> >
> >> >> > + case $1 in
> >> >> >
> >> >> > + CSGXMLFILE=settings.xml
> >> >> >
> >> >> > + [[ -f settings.xml ]]
> >> >> >
> >> >> > ++ globalize_file settings.xml
> >> >> >
> >> >> > ++ [[ -z settings.xml ]]
> >> >> >
> >> >> > ++ [[ -f settings.xml ]]
> >> >> >
> >> >> > ++ local dir
> >> >> >
> >> >> > ++ [[ settings.xml = settings.xml ]]
> >> >> >
> >> >> > ++ dir=.
> >> >> >
> >> >> > +++ globalize_dir .
> >> >> >
> >> >> > +++ [[ -z . ]]
> >> >> >
> >> >> > +++ [[ -d . ]]
> >> >> >
> >> >> > +++ cd .
> >> >> >
> >> >> > +++ pwd
> >> >> >
> >> >> > ++ echo
> /Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all/settings.xml
> >> >> >
> >> >> > + export
> CSGXMLFILE=/Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all/settings.xml
>
>
> >> >> >
> >> >> > +
> CSGXMLFILE=/Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all/settings.xml
>
>
> >> >> >
> >> >> > + shift 2
> >> >> >
> >> >> > + [[ -debug != --debug ]]
> >> >> >
> >> >> > + [[ debug = --debug ]]
> >> >> >
> >> >> > + case $1 in
> >> >> >
> >> >> > + export CSGDEBUG=yes
> >> >> >
> >> >> > + CSGDEBUG=yes
> >> >> >
> >> >> > + shift
> >> >> >
> >> >> > + [[ '' != '' ]]
> >> >> >
> >> >> > + [[ -z
> /Users/ramongonzalezperez/votca/csg-tutorials/hexane/ibi_all/settings.xml
> ]]
> >> >> >
> >> >> > + [[ '' = \c\l\e\a\n ]]
> >> >> >
> >> >> > + enable_logging
> >> >> >
> >> >> > + local log
> >> >> >
> >> >> > + [[ -z '' ]]
> >> >> >
> >> >> > ++ csg_get_property cg.inverse.log_file
> >> >> >
> >> >> > ./run.sh: line 4: 67692 Terminated: 15 csg_inverse
> --options settings.xml --debug
> >> >> >
> >> >> >
> >> >> > On Tuesday, March 19, 2019 at 8:59:31 PM UTC-6, Christoph Junghans
> wrote:
> >> >> >>
> >> >> >> On Tue, Mar 19, 2019 at 6:52 PM <[email protected]>
> wrote:
> >> >> >> >
> >> >> >> > Yes, I sourced using
> >> >> >> >
> >> >> >> > source votca/bin/VOTCARC.bash
> >> >> >> >
> >> >> >> > The version is 1.6-dev.
> >> >> >> Try to add "--debug" to csg_inverse call and post the output
> here.
> >> >> >>
> >> >> >> Christoph
> >> >> >> >
> >> >> >> > On Tuesday, March 19, 2019 at 5:49:18 PM UTC-6, Christoph
> Junghans wrote:
> >> >> >> >>
> >> >> >> >> On Tue, Mar 19, 2019 at 5:32 PM <[email protected]>
> wrote:
> >> >> >> >> >
> >> >> >> >> > Hello,
> >> >> >> >> >
> >> >> >> >> > I get this output when I execute csg_inverse:
> >> >> >> >> >
> >> >> >> >> > running csg_inverse --options "settings.xml"
> >> >> >> >> >
> >> >> >> >> > ./run.sh: line 4: 42366 Terminated: 15 csg_inverse
> --options settings.xml
> >> >> >> >> >
> >> >> >> >> >
> >> >> >> >> > What could be the problem?
> >> >> >> >> What version of VOTCA is this?
> >> >> >> >> Did you source VOTCARC?
> >> >> >> >>
> >> >> >> >> Christoph
> >> >> >> >> >
> >> >> >> >> > --
> >> >> >> >> > You received this message because you are subscribed to the
> Google Groups "votca" group.
> >> >> >> >> > To unsubscribe from this group and stop receiving emails
> from it, send an email to [email protected].
> >> >> >> >> > To post to this group, send email to [email protected].
>
> >> >> >> >> > Visit this group at https://groups.google.com/group/votca.
> >> >> >> >> > For more options, visit https://groups.google.com/d/optout.
> >> >> >> >>
> >> >> >> >>
> >> >> >> >>
> >> >> >> >> --
> >> >> >> >> Christoph Junghans
> >> >> >> >> Web: http://www.compphys.de
> >> >> >> >
> >> >> >> > --
> >> >> >> > You received this message because you are subscribed to the
> Google Groups "votca" group.
> >> >> >> > To unsubscribe from this group and stop receiving emails from
> it, send an email to [email protected].
> >> >> >> > To post to this group, send email to [email protected].
> >> >> >> > Visit this group at https://groups.google.com/group/votca.
> >> >> >> > For more options, visit https://groups.google.com/d/optout.
> >> >> >>
> >> >> >>
> >> >> >>
> >> >> >> --
> >> >> >> Christoph Junghans
> >> >> >> Web: http://www.compphys.de
> >> >> >
> >> >> > --
> >> >> > You received this message because you are subscribed to the Google
> Groups "votca" group.
> >> >> > To unsubscribe from this group and stop receiving emails from it,
> send an email to [email protected].
> >> >> > To post to this group, send email to [email protected].
> >> >> > Visit this group at https://groups.google.com/group/votca.
> >> >> > For more options, visit https://groups.google.com/d/optout.
> >> >>
> >> >>
> >> >>
> >> >> --
> >> >> Christoph Junghans
> >> >> Web: http://www.compphys.de
> >> >
> >> > --
> >> > You received this message because you are subscribed to the Google
> Groups "votca" group.
> >> > To unsubscribe from this group and stop receiving emails from it,
> send an email to [email protected].
> >> > To post to this group, send email to [email protected].
> >> > Visit this group at https://groups.google.com/group/votca.
> >> > For more options, visit https://groups.google.com/d/optout.
> >>
> >>
> >>
> >> --
> >> Christoph Junghans
> >> Web: http://www.compphys.de
> >
> > --
> > You received this message because you are subscribed to the Google
> Groups "votca" group.
> > To unsubscribe from this group and stop receiving emails from it, send
> an email to [email protected] <javascript:>.
> > To post to this group, send email to [email protected]
> <javascript:>.
> > Visit this group at https://groups.google.com/group/votca.
> > For more options, visit https://groups.google.com/d/optout.
>
>
>
> --
> Christoph Junghans
> Web: http://www.compphys.de
>
--
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