Hey Users, I am running a coarse grained simulation of 10mer PB. After 10 steps, each of 2 ns, the non-bonded potentials seem to converge But the bonded interactions are smoothed but seem a little shifted (attached files). The convergence limit ( as seen from AB.bond.conv) also does not change in these 10 steps (equal to ~ 100) and * (I don't think It will match anymore)* The convergence limit I have given is 0.003. Should the simulation be stopped at this point. I am confused if my bonded potentials are correct?
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