`disown` might be the solution. Christoph Junghans schrieb am Donnerstag, 27. August 2020 um 15:09:58 UTC+2:
> > > On Thu, Aug 27, 2020, 01:16 Pragati Sharma <[email protected]> wrote: > >> The command "nohup run.sh &" does not work for running run.sh in >> background. >> > What is the error message? > > Otherwise try running it normally in foreground and then press control-Z > and type 'bg' (see > https://www.informit.com/articles/article.aspx?p=2854374&seqNum=6) > > Christoph > > >> On Wed, Aug 26, 2020 at 11:02 PM Christoph Junghans <[email protected]> >> wrote: >> >>> On Wed, Aug 26, 2020 at 10:53 AM Pragati Sharma <[email protected]> >>> wrote: >>> > >>> > Thanks christoph for the prompt response. >>> > >>> > I have one query though. >>> > >>> > I am running csg_inverse and consequent mdrun command for all steps >>> using run.sh script. I want to run the command in background. >>> > I tried writing "nohup" with mdrun in settings.xml file. Also tried >>> adding nohup before csg_inverse in script or also from the terminal. But >>> the process does not go to background and stops as soon shell is closed. >>> > How can I run the run.sh in background. >>> I think "nohup run.sh &" should work. >>> >>> Christoph >>> > >>> > Thanks for your help. >>> > >>> > >>> > On Tue, 25 Aug, 2020, 6:43 PM Christoph Junghans, <[email protected]> >>> wrote: >>> >> >>> >> On Tue, Aug 25, 2020 at 6:33 AM Pragati Sharma <[email protected]> >>> wrote: >>> >> > >>> >> > Hey Users, >>> >> > >>> >> > I am running a coarse grained simulation of 10mer PB. After 10 >>> steps, each of 2 ns, the non-bonded potentials seem to converge But the >>> bonded interactions are smoothed but seem a little shifted (attached >>> files). The convergence limit ( as seen from AB.bond.conv) also does not >>> change in these 10 steps (equal to ~ 100) and (I don't think It will >>> match anymore) >>> >> > The convergence limit I have given is 0.003. >>> >> > Should the simulation be stopped at this point. I am confused if my >>> bonded potentials are correct? >>> >> There are scaling factors for the conversion factor you can set for >>> >> each interaction, that is is useful if one interaction hasn't fully >>> >> converged yet, like in your case. >>> >> >>> >> To your question, I would run it a little longer, e.g. you could just >>> >> iterate the bonded interaction for 50 steps overnight and see where it >>> >> gets. you >>> >> >>> >> Christoph >>> >> >>> >> > >>> >> > Thanks >>> >> > >>> >> > >>> >> > -- >>> >> > Join us on Slack: https://join.slack.com/t/votca/signup >>> >> > --- >>> >> > You received this message because you are subscribed to the Google >>> Groups "votca" group. >>> >> > To unsubscribe from this group and stop receiving emails from it, >>> send an email to [email protected]. >>> >> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/votca/CAMpF9Q1fYvv1%2BhSan-G-PTLzZkQT5DM-RN6cWm3WzBd7zdw_tA%40mail.gmail.com >>> . >>> >> >>> >> >>> >> >>> >> -- >>> >> Christoph Junghans >>> >> Web: http://www.compphys.de >>> >> >>> >> -- >>> >> Join us on Slack: https://join.slack.com/t/votca/signup >>> >> --- >>> >> You received this message because you are subscribed to the Google >>> Groups "votca" group. >>> >> To unsubscribe from this group and stop receiving emails from it, >>> send an email to [email protected]. >>> >> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/votca/CAHG27e6pwfPhPsssdm-n9wxHp8yR2d-WixqzML3f454Xwg7mSA%40mail.gmail.com >>> . >>> > >>> > -- >>> > Join us on Slack: https://join.slack.com/t/votca/signup >>> > --- >>> > You received this message because you are subscribed to the Google >>> Groups "votca" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/votca/CAMpF9Q0sQ5ZUC5BW4WPGCMnSppx%2BGYo1o-OT3FH7d8_z5prdrw%40mail.gmail.com >>> . >>> >>> >>> >>> -- >>> Christoph Junghans >>> Web: http://www.compphys.de >>> >>> -- >>> Join us on Slack: https://join.slack.com/t/votca/signup >>> --- >>> You received this message because you are subscribed to the Google >>> Groups "votca" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/votca/CAHG27e7OVsZ0B2sT9KfKH9UJ%2BD1Wo4soDrb2a%2B5fOV2hj4-geQ%40mail.gmail.com >>> . >>> >> -- >> Join us on Slack: https://join.slack.com/t/votca/signup >> --- >> You received this message because you are subscribed to the Google Groups >> "votca" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/votca/CAMpF9Q12O%2B-M20Ti1aTRrE6pyBbUh1r_Vhh4YuR_-6zge%3D7wCQ%40mail.gmail.com >> >> <https://groups.google.com/d/msgid/votca/CAMpF9Q12O%2B-M20Ti1aTRrE6pyBbUh1r_Vhh4YuR_-6zge%3D7wCQ%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > -- Join us on Slack: https://join.slack.com/t/votca/signup --- You received this message because you are subscribed to the Google Groups "votca" group. 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