On Mon, Aug 31, 2020 at 6:23 PM Clement Koh <[email protected]> wrote: > > Thanks for the quick reply. I used gcc 7.2.0 instead and now I'm stuck on the > following error: The error below looks like the boost has been compiled with an older compiler.
I recommend building votca with Spack, see https://github.com/votca/votca/blob/master/share/doc/INSTALL.rst#spack that will build all the dependencies as well. Christoph > > Scanning dependencies of target votca_tools_manpages > [ 0%] Built target votca_tools_manpages > Scanning dependencies of target gitversion > Current git revision is 521998a > [ 0%] Built target gitversion > Scanning dependencies of target votca_tools > [ 1%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o > [ 2%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o > [ 2%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o > [ 3%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o > [ 4%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o > [ 5%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o > [ 6%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o > [ 6%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o > [ 7%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o > [ 8%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o > [ 9%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/elements.cc.o > [ 10%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o > [ 10%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o > [ 11%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph.cc.o > [ 12%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o > [ 13%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o > [ 14%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphalgorithm.cc.o > [ 14%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphdistvisitor.cc.o > [ 15%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphnode.cc.o > [ 16%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o > [ 17%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o > [ 18%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o > [ 18%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o > [ 19%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o > [ 20%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o > [ 21%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o > [ 22%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/property.cc.o > [ 22%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o > [ 23%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o > [ 24%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o > [ 25%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o > [ 26%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o > [ 26%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/table.cc.o > [ 27%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o > [ 28%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o > [ 29%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o > [ 30%] Linking CXX shared library libvotca_tools.so > [ 30%] Built target votca_tools > Scanning dependencies of target votca_property > [ 30%] Building CXX object > tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o > [ 31%] Linking CXX executable votca_property > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `boost::program_options::typed_value<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> >, char>::xparse(boost::any&, > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&) const': > votca_property.cc:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE]+0x76): > undefined reference to `boost::program_options::validate(boost::any&, > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&, > std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, int)' > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `boost::program_options::typed_value<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> >, char>::name() const': > votca_property.cc:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv]+0x20): > undefined reference to `boost::program_options::arg[abi:cxx11]' > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `boost::program_options::typed_value<long, char>::name[abi:cxx11]() const': > votca_property.cc:(.text._ZNK5boost15program_options11typed_valueIlcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIlcE4nameB5cxx11Ev]+0x20): > undefined reference to `boost::program_options::arg[abi:cxx11]' > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, > std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> > const&, std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&, int)': > votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x21): > undefined reference to > `boost::program_options::validation_error::get_template[abi:cxx11](boost::program_options::validation_error::kind_t)' > votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x39): > undefined reference to > `boost::program_options::error_with_option_name::error_with_option_name(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&, > std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > const&, std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> > const&, int)' > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `VotcaProperty::Run()': > votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x58): > undefined reference to > `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' > votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x247): > undefined reference to > `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' > votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x3e7): > undefined reference to > `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' > CMakeFiles/votca_property.dir/votca_property.cc.o: In function `void > boost::program_options::validate<long, char>(boost::any&, > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&, long*, long)': > votca_property.cc:(.text._ZN5boost15program_options8validateIlcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIlcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x4f8): > undefined reference to > `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x30): > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x30): > more undefined references to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&) const' follow > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE[_ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE]+0x38): > undefined reference to > `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&, bool) const' > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options11typed_valueIlcEE[_ZTVN5boost15program_options11typed_valueIlcEE]+0x38): > undefined reference to > `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&, bool) const' > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::option_description::description[abi:cxx11]() const' > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::option_description::format_parameter[abi:cxx11]() > const' > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::option_description::format_name[abi:cxx11]() const' > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::detail::cmdline::cmdline(std::vector<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> >, > std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> > > > const&)' > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::to_internal(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&, unsigned int, > unsigned int)' > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::detail::cmdline::set_additional_parser(boost::function1<std::pair<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> >, > std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> > const&>)' > collect2: error: ld returned 1 exit status > make[2]: *** [tools/src/tools/votca_property] Error 1 > make[1]: *** [tools/src/tools/CMakeFiles/votca_property.dir/all] Error 2 > make: *** [all] Error 2 > > On Monday, August 31, 2020 at 7:44:54 PM UTC-4 Christoph Junghans wrote: >> >> make_unique is a C++-14 feature, looking at >> https://gcc.gnu.org/projects/cxx-status.html#cxx14 it seems gcc 4.8.5 >> isn't fully supporting that standard. >> >> Just use a newer compiler. >> >> Christoph >> >> On Mon, Aug 31, 2020 at 5:11 PM Clement Koh <[email protected]> wrote: >> > >> > Hi, >> > >> > I'm trying to compile votca on my local cluster and I'm facing an error at >> > the make step. Does anyone have any idea what the issue could be? The make >> > step output is below: >> > >> > Scanning dependencies of target votca_tools_manpages >> > [ 0%] Built target votca_tools_manpages >> > Scanning dependencies of target gitversion >> > Current git revision is 521998a >> > [ 0%] Built target gitversion >> > Scanning dependencies of target votca_tools >> > [ 1%] Building CXX object >> > tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o >> > [ 2%] Building CXX object >> > tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o >> > In file included from >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:23:0, >> > from >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/application.h:21, >> > from >> > /moto/home/cfk2120/packages/votca/tools/src/libtools/application.cc:19: >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/tokenizer.h: >> > In constructor ‘votca::tools::Tokenizer::Tokenizer(const string&, const >> > char*)’: >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/tokenizer.h:50:11: >> > error: ‘make_unique’ is not a member of ‘std’ >> > tok = std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str, >> > ^ >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/tokenizer.h:50:73: >> > error: expected primary-expression before ‘>’ token >> > tok = std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str, >> > ^ >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/tokenizer.h:51:75: >> > warning: left operand of comma operator has no effect [-Wunused-value] >> > sep); >> > ^ >> > In file included from >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/application.h:21:0, >> > from >> > /moto/home/cfk2120/packages/votca/tools/src/libtools/application.cc:19: >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h: In >> > constructor ‘votca::tools::Property::Property(const string&, const >> > string&, const string&)’: >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:59:7: >> > warning: declaration of ‘path’ shadows a member of 'this' [-Wshadow] >> > : _name(name), _value(value), _path(path) {} >> > ^ >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:59:7: >> > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:59:7: >> > warning: declaration of ‘name’ shadows a member of 'this' [-Wshadow] >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h: In >> > member function ‘votca::tools::Property& votca::tools::Property::set(const >> > string&, const string&)’: >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:248:56: >> > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] >> > const std::string &value) { >> > ^ >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h: In >> > member function ‘votca::tools::Property& votca::tools::Property::add(const >> > string&, const string&)’: >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:255:56: >> > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] >> > const std::string &value) { >> > ^ >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:256:15: >> > warning: declaration of ‘path’ shadows a member of 'this' [-Wshadow] >> > std::string path = _path; >> > ^ >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h: In >> > member function ‘void votca::tools::Property::setAttribute(const string&, >> > const T&)’: >> > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:420:50: >> > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] >> > const T &value) { >> > ^ >> > make[2]: *** >> > [tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o] Error 1 >> > make[1]: *** [tools/src/libtools/CMakeFiles/votca_tools.dir/all] Error 2 >> > make: *** [all] Error 2 >> > >> > I followed the general installation instructions listed online, with my >> > cmake step being: >> > cmake -DBUILD_CSAPPS=ON >> > -DCMAKE_INSTALL_PREFIX=/moto/home/cfk2120/packages/votca_build >> > -DGROMACS_INCLUDE_DIR=/moto/kumar/users/cfk2120/serial_gromacs/include >> > -DGROMACS_LIBRARY=/moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so >> > -DLIBXC_LIBRARY=/moto/home/cfk2120/packages/libxc/lib >> > -DLIBXC_INCLUDE_DIR=/moto/home/cfk2120/packages/libxc/include .. >> > >> > The output of cmake is the following: >> > -- The C compiler identification is GNU 4.8.5 >> > -- The CXX compiler identification is GNU 4.8.5 >> > -- Check for working C compiler: /usr/bin/cc >> > -- Check for working C compiler: /usr/bin/cc -- works >> > -- Detecting C compiler ABI info >> > -- Detecting C compiler ABI info - done >> > -- Detecting C compile features >> > -- Detecting C compile features - done >> > -- Check for working CXX compiler: /usr/bin/c++ >> > -- Check for working CXX compiler: /usr/bin/c++ -- works >> > -- Detecting CXX compiler ABI info >> > -- Detecting CXX compiler ABI info - done >> > -- Detecting CXX compile features >> > -- Detecting CXX compile features - done >> > -- Performing Test COMPILER_SUPPORTS-Wall >> > -- Performing Test COMPILER_SUPPORTS-Wall - Success >> > -- Performing Test COMPILER_SUPPORTS-Wextra >> > -- Performing Test COMPILER_SUPPORTS-Wextra - Success >> > -- Performing Test COMPILER_SUPPORTS-Wpedantic >> > -- Performing Test COMPILER_SUPPORTS-Wpedantic - Success >> > -- Performing Test COMPILER_SUPPORTS-Wshadow >> > -- Performing Test COMPILER_SUPPORTS-Wshadow - Success >> > -- Performing Test COMPILER_SUPPORTS-Wconversion >> > -- Performing Test COMPILER_SUPPORTS-Wconversion - Success >> > -- Found Git: /usr/bin/git (found version "1.8.3.1") >> > -- Looking for pthread.h >> > -- Looking for pthread.h - found >> > -- Looking for pthread_create >> > -- Looking for pthread_create - not found >> > -- Looking for pthread_create in pthreads >> > -- Looking for pthread_create in pthreads - not found >> > -- Looking for pthread_create in pthread >> > -- Looking for pthread_create in pthread - found >> > -- Found Threads: TRUE >> > -- Boost version: 1.53.0 >> > -- Found the following Boost libraries: >> > -- program_options >> > -- filesystem >> > -- system >> > -- Check size of int >> > -- Check size of int - done >> > -- Could NOT find MKL (missing: MKL_INCLUDE_DIR MKL_Core_LINK_LIBRARY) >> > -- Found Eigen3: /moto/kumar/users/cfk2120/eigen_build >> > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") >> > -- Checking for module 'fftw3' >> > -- No package 'fftw3' found >> > -- Could NOT find FFTW3 (missing: FFTW3_LIBRARY FFTW3_INCLUDE_DIR) >> > -- Looking for assert.h >> > -- Looking for assert.h - found >> > -- Looking for math.h >> > -- Looking for math.h - found >> > -- Looking for stdio.h >> > -- Looking for stdio.h - found >> > -- Looking for stdlib.h >> > -- Looking for stdlib.h - found >> > -- Looking for string.h >> > -- Looking for string.h - found >> > -- Looking for C++ include cmath >> > -- Looking for C++ include cmath - found >> > -- Looking for C++ include fstream >> > -- Looking for C++ include fstream - found >> > -- Looking for C++ include functional >> > -- Looking for C++ include functional - found >> > -- Looking for C++ include iostream >> > -- Looking for C++ include iostream - found >> > -- Looking for C++ include limits >> > -- Looking for C++ include limits - found >> > -- Looking for C++ include list >> > -- Looking for C++ include list - found >> > -- Looking for C++ include map >> > -- Looking for C++ include map - found >> > -- Looking for C++ include ostream >> > -- Looking for C++ include ostream - found >> > -- Looking for C++ include sstream >> > -- Looking for C++ include sstream - found >> > -- Looking for C++ include stack >> > -- Looking for C++ include stack - found >> > -- Looking for C++ include stdexcept >> > -- Looking for C++ include stdexcept - found >> > -- Looking for C++ include string >> > -- Looking for C++ include string - found >> > -- Looking for C++ include vector >> > -- Looking for C++ include vector - found >> > -- Looking for sqrt in m >> > -- Looking for sqrt in m - found >> > -- Found EXPAT: /usr/lib64/libexpat.so (found version "2.1.0") >> > -- Performing Test HAVE_AIX >> > -- Performing Test HAVE_AIX - Failed >> > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE) >> > txt2tags not found, help cmake to find it by setting TXT2TAGS_EXECUTABLE >> > -- Found UnixCommands: /usr/bin/bash >> > -- Boost version: 1.53.0 >> > -- Found the following Boost libraries: >> > -- program_options >> > -- filesystem >> > -- system >> > -- Found Eigen3: /moto/kumar/users/cfk2120/eigen_build >> > -- Found VOTCA_TOOLS: >> > -- Checking for module 'libgromacs_d' >> > -- No package 'libgromacs_d' found >> > -- Checking for module 'libgromacs' >> > -- No package 'libgromacs' found >> > -- Looking for c++ gmx_version in >> > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so >> > -- Looking for c++ gmx_version in >> > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so - found >> > -- Looking for c++ gmx_is_single_precision in >> > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so >> > -- Looking for c++ gmx_is_single_precision in >> > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so - found >> > -- Looking for c++ gmx_is_double_precision in >> > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so >> > -- Looking for c++ gmx_is_double_precision in >> > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so - not found >> > -- Found GROMACS: >> > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so (found >> > suitable version "2018.7", minimum required is "2018") >> > -- Could NOT find GMX (missing: GMX_EXECUTABLE) >> > -- Looking for C++ include algorithm >> > -- Looking for C++ include algorithm - found >> > -- Looking for C++ include iomanip >> > -- Looking for C++ include iomanip - found >> > -- Looking for C++ include numeric >> > -- Looking for C++ include numeric - found >> > -- Looking for C++ include cstdlib >> > -- Looking for C++ include cstdlib - found >> > -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) >> > (found version "") >> > -- Could NOT find LMP (missing: LMP_EXECUTABLE) >> > -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) >> > -- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but >> > required is at least "10" (found CLANG_FORMAT_EXECUTABLE-NOTFOUND) >> > -- The following OPTIONAL packages have been found: >> > >> > * Git >> > * UnixCommands >> > * PkgConfig >> > >> > -- The following REQUIRED packages have been found: >> > >> > * EXPAT >> > * Threads >> > * Boost (required version >= 1.53.0) >> > * Eigen3 (required version >= 3.3.0) >> > * GROMACS (required version >= 2018) >> > >> > -- The following OPTIONAL packages have not been found: >> > >> > * MKL >> > * FFTW3 >> > * TXT2TAGS >> > * HDF5 >> > * Doxygen >> > * CLANG_FORMAT (required version >= 10) >> > >> > -- Configuring done >> > -- Generating done >> > CMake Warning: >> > Manually-specified variables were not used by the project: >> > >> > BUILD_CSAPPS >> > LIBXC_INCLUDE_DIR >> > LIBXC_LIBRARY >> > >> > -- >> > Join us on Slack: https://join.slack.com/t/votca/signup >> > --- >> > You received this message because you are subscribed to the Google Groups >> > "votca" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to [email protected]. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/votca/ce8d422f-b3a8-4bfa-9fb4-da92af09fd72n%40googlegroups.com. >> >> >> >> -- >> Christoph Junghans >> Web: http://www.compphys.de > > -- > Join us on Slack: https://join.slack.com/t/votca/signup > --- > You received this message because you are subscribed to the Google Groups > "votca" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/69af1833-1d78-4aba-b505-bbd03cc05197n%40googlegroups.com. -- Christoph Junghans Web: http://www.compphys.de -- Join us on Slack: https://join.slack.com/t/votca/signup --- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/votca/CAHG27e6Hbvy46aXMUm1sqnbMh-JhQ7gmvYePr86vio__ydvaKQ%40mail.gmail.com.
