Thanks! I tried Spack but it faced errors compiling boost. I ended up compiling my own boost using gcc 7.2.0. And then I had to make cmake refer to the new boost directory.
This ended up being my command for cmake: BOOST_ROOT=/moto/kumar/users/cfk2120/boost CC=/cm/local/apps/gcc/7.2.0/bin/gcc CXX=/cm/local/apps/gcc/7.2.0/bin/g++ ../../my_cmake/bin/cmake -DBUILD_CSAPPS=ON -DCMAKE_INSTALL_PREFIX=/moto/home/cfk2120/packages/votca_build -DGROMACS_INCLUDE_DIR=/moto/kumar/users/cfk2120/serial_gromacs/include -DGROMACS_LIBRARY=/moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so .. On Monday, August 31, 2020 at 8:27:45 PM UTC-4 Christoph Junghans wrote: > On Mon, Aug 31, 2020 at 6:23 PM Clement Koh <[email protected]> wrote: > > > > Thanks for the quick reply. I used gcc 7.2.0 instead and now I'm stuck > on the following error: > The error below looks like the boost has been compiled with an older > compiler. > > I recommend building votca with Spack, see > https://github.com/votca/votca/blob/master/share/doc/INSTALL.rst#spack > that will build all the dependencies as well. > > Christoph > > > > Scanning dependencies of target votca_tools_manpages > > [ 0%] Built target votca_tools_manpages > > Scanning dependencies of target gitversion > > Current git revision is 521998a > > [ 0%] Built target gitversion > > Scanning dependencies of target votca_tools > > [ 1%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o > > [ 2%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o > > [ 2%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/calculator.cc.o > > [ 3%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/colors.cc.o > > [ 4%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/correlate.cc.o > > [ 5%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/crosscorrelate.cc.o > > [ 6%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/cubicspline.cc.o > > [ 6%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/datacollection.cc.o > > [ 7%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/edge.cc.o > > [ 8%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/edgecontainer.cc.o > > [ 9%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/elements.cc.o > > [ 10%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/filesystem.cc.o > > [ 10%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/globals.cc.o > > [ 11%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph.cc.o > > [ 12%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph_bf_visitor.cc.o > > [ 13%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graph_df_visitor.cc.o > > [ 14%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphalgorithm.cc.o > > [ 14%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphdistvisitor.cc.o > > [ 15%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphnode.cc.o > > [ 16%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/graphvisitor.cc.o > > [ 17%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/histogram.cc.o > > [ 18%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/histogramnew.cc.o > > [ 18%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/linalg.cc.o > > [ 19%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/linspline.cc.o > > [ 20%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/mutex.cc.o > > [ 21%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/parcer.cc.o > > [ 22%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/property.cc.o > > [ 22%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/propertyiomanipulator.cc.o > > [ 23%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/rangeparser.cc.o > > [ 24%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/reducededge.cc.o > > [ 25%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/reducedgraph.cc.o > > [ 26%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/spline.cc.o > > [ 26%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/table.cc.o > > [ 27%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/thread.cc.o > > [ 28%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/tokenizer.cc.o > > [ 29%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/version.cc.o > > [ 30%] Linking CXX shared library libvotca_tools.so > > [ 30%] Built target votca_tools > > Scanning dependencies of target votca_property > > [ 30%] Building CXX object > tools/src/tools/CMakeFiles/votca_property.dir/votca_property.cc.o > > [ 31%] Linking CXX executable votca_property > > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `boost::program_options::typed_value<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> >, char>::xparse(boost::any&, > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&) const': > > > votca_property.cc:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE]+0x76): > > undefined reference to `boost::program_options::validate(boost::any&, > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&, > std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >*, int)' > > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `boost::program_options::typed_value<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> >, char>::name() const': > > > votca_property.cc:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameEv]+0x20): > > undefined reference to `boost::program_options::arg[abi:cxx11]' > > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `boost::program_options::typed_value<long, char>::name[abi:cxx11]() const': > > > votca_property.cc:(.text._ZNK5boost15program_options11typed_valueIlcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIlcE4nameB5cxx11Ev]+0x20): > > undefined reference to `boost::program_options::arg[abi:cxx11]' > > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, > > std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> > const&, std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&, int)': > > > votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x21): > > undefined reference to > `boost::program_options::validation_error::get_template[abi:cxx11](boost::program_options::validation_error::kind_t)' > > > votca_property.cc:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x39): > > undefined reference to > `boost::program_options::error_with_option_name::error_with_option_name(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&, > std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> > const&, std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&, int)' > > CMakeFiles/votca_property.dir/votca_property.cc.o: In function > `VotcaProperty::Run()': > > > votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x58): > > undefined reference to > `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' > > > votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x247): > > undefined reference to > `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' > > > votca_property.cc:(.text._ZN13VotcaProperty3RunEv[_ZN13VotcaProperty3RunEv]+0x3e7): > > undefined reference to > `boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' > > CMakeFiles/votca_property.dir/votca_property.cc.o: In function `void > boost::program_options::validate<long, char>(boost::any&, > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&, long*, long)': > > > votca_property.cc:(.text._ZN5boost15program_options8validateIlcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIlcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x4f8): > > undefined reference to > `boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&)' > > > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): > > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' > > > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): > > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' > > > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): > > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' > > > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): > > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' > > > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x30): > > undefined reference to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' > > > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x30): > > more undefined references to > `boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&) const' follow > > > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE[_ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE]+0x38): > > undefined reference to > `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, > > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&, bool) const' > > > CMakeFiles/votca_property.dir/votca_property.cc.o:(.rodata._ZTVN5boost15program_options11typed_valueIlcEE[_ZTVN5boost15program_options11typed_valueIlcEE]+0x38): > > undefined reference to > `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, > > std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > > > const&, bool) const' > > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::option_description::description[abi:cxx11]() const' > > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::option_description::format_parameter[abi:cxx11]() > const' > > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::option_description::format_name[abi:cxx11]() const' > > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::detail::cmdline::cmdline(std::vector<std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> >, > std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> > > > const&)' > > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::to_internal(std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&)' > > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> > const&, unsigned int, > unsigned int)' > > ../libtools/libvotca_tools.so.6: undefined reference to > `boost::program_options::detail::cmdline::set_additional_parser(boost::function1<std::pair<std::__cxx11::basic_string<char, > > std::char_traits<char>, std::allocator<char> >, > std::__cxx11::basic_string<char, std::char_traits<char>, > std::allocator<char> > >, std::__cxx11::basic_string<char, > std::char_traits<char>, std::allocator<char> > const&>)' > > collect2: error: ld returned 1 exit status > > make[2]: *** [tools/src/tools/votca_property] Error 1 > > make[1]: *** [tools/src/tools/CMakeFiles/votca_property.dir/all] Error 2 > > make: *** [all] Error 2 > > > > On Monday, August 31, 2020 at 7:44:54 PM UTC-4 Christoph Junghans wrote: > >> > >> make_unique is a C++-14 feature, looking at > >> https://gcc.gnu.org/projects/cxx-status.html#cxx14 it seems gcc 4.8.5 > >> isn't fully supporting that standard. > >> > >> Just use a newer compiler. > >> > >> Christoph > >> > >> On Mon, Aug 31, 2020 at 5:11 PM Clement Koh <[email protected]> wrote: > >> > > >> > Hi, > >> > > >> > I'm trying to compile votca on my local cluster and I'm facing an > error at the make step. Does anyone have any idea what the issue could be? > The make step output is below: > >> > > >> > Scanning dependencies of target votca_tools_manpages > >> > [ 0%] Built target votca_tools_manpages > >> > Scanning dependencies of target gitversion > >> > Current git revision is 521998a > >> > [ 0%] Built target gitversion > >> > Scanning dependencies of target votca_tools > >> > [ 1%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/akimaspline.cc.o > >> > [ 2%] Building CXX object > tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o > >> > In file included from > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:23:0, > >> > from > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/application.h:21, > >> > from > /moto/home/cfk2120/packages/votca/tools/src/libtools/application.cc:19: > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/tokenizer.h: In > constructor ‘votca::tools::Tokenizer::Tokenizer(const string&, const > char*)’: > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/tokenizer.h:50:11: > > error: ‘make_unique’ is not a member of ‘std’ > >> > tok = > std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str, > >> > ^ > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/tokenizer.h:50:73: > > error: expected primary-expression before ‘>’ token > >> > tok = > std::make_unique<boost::tokenizer<boost::char_separator<char>>>(_str, > >> > ^ > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/tokenizer.h:51:75: > > warning: left operand of comma operator has no effect [-Wunused-value] > >> > sep); > >> > ^ > >> > In file included from > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/application.h:21:0, > >> > from > /moto/home/cfk2120/packages/votca/tools/src/libtools/application.cc:19: > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h: In > constructor ‘votca::tools::Property::Property(const string&, const string&, > const string&)’: > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:59:7: > warning: declaration of ‘path’ shadows a member of 'this' [-Wshadow] > >> > : _name(name), _value(value), _path(path) {} > >> > ^ > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:59:7: > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:59:7: > warning: declaration of ‘name’ shadows a member of 'this' [-Wshadow] > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h: In > member function ‘votca::tools::Property& votca::tools::Property::set(const > string&, const string&)’: > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:248:56: > > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] > >> > const std::string &value) { > >> > ^ > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h: In > member function ‘votca::tools::Property& votca::tools::Property::add(const > string&, const string&)’: > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:255:56: > > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] > >> > const std::string &value) { > >> > ^ > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:256:15: > > warning: declaration of ‘path’ shadows a member of 'this' [-Wshadow] > >> > std::string path = _path; > >> > ^ > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h: In > member function ‘void votca::tools::Property::setAttribute(const string&, > const T&)’: > >> > > /moto/home/cfk2120/packages/votca/tools/include/votca/tools/property.h:420:50: > > warning: declaration of ‘value’ shadows a member of 'this' [-Wshadow] > >> > const T &value) { > >> > ^ > >> > make[2]: *** > [tools/src/libtools/CMakeFiles/votca_tools.dir/application.cc.o] Error 1 > >> > make[1]: *** [tools/src/libtools/CMakeFiles/votca_tools.dir/all] > Error 2 > >> > make: *** [all] Error 2 > >> > > >> > I followed the general installation instructions listed online, with > my cmake step being: > >> > cmake -DBUILD_CSAPPS=ON > -DCMAKE_INSTALL_PREFIX=/moto/home/cfk2120/packages/votca_build > -DGROMACS_INCLUDE_DIR=/moto/kumar/users/cfk2120/serial_gromacs/include > -DGROMACS_LIBRARY=/moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so > > -DLIBXC_LIBRARY=/moto/home/cfk2120/packages/libxc/lib > -DLIBXC_INCLUDE_DIR=/moto/home/cfk2120/packages/libxc/include .. > >> > > >> > The output of cmake is the following: > >> > -- The C compiler identification is GNU 4.8.5 > >> > -- The CXX compiler identification is GNU 4.8.5 > >> > -- Check for working C compiler: /usr/bin/cc > >> > -- Check for working C compiler: /usr/bin/cc -- works > >> > -- Detecting C compiler ABI info > >> > -- Detecting C compiler ABI info - done > >> > -- Detecting C compile features > >> > -- Detecting C compile features - done > >> > -- Check for working CXX compiler: /usr/bin/c++ > >> > -- Check for working CXX compiler: /usr/bin/c++ -- works > >> > -- Detecting CXX compiler ABI info > >> > -- Detecting CXX compiler ABI info - done > >> > -- Detecting CXX compile features > >> > -- Detecting CXX compile features - done > >> > -- Performing Test COMPILER_SUPPORTS-Wall > >> > -- Performing Test COMPILER_SUPPORTS-Wall - Success > >> > -- Performing Test COMPILER_SUPPORTS-Wextra > >> > -- Performing Test COMPILER_SUPPORTS-Wextra - Success > >> > -- Performing Test COMPILER_SUPPORTS-Wpedantic > >> > -- Performing Test COMPILER_SUPPORTS-Wpedantic - Success > >> > -- Performing Test COMPILER_SUPPORTS-Wshadow > >> > -- Performing Test COMPILER_SUPPORTS-Wshadow - Success > >> > -- Performing Test COMPILER_SUPPORTS-Wconversion > >> > -- Performing Test COMPILER_SUPPORTS-Wconversion - Success > >> > -- Found Git: /usr/bin/git (found version "1.8.3.1") > >> > -- Looking for pthread.h > >> > -- Looking for pthread.h - found > >> > -- Looking for pthread_create > >> > -- Looking for pthread_create - not found > >> > -- Looking for pthread_create in pthreads > >> > -- Looking for pthread_create in pthreads - not found > >> > -- Looking for pthread_create in pthread > >> > -- Looking for pthread_create in pthread - found > >> > -- Found Threads: TRUE > >> > -- Boost version: 1.53.0 > >> > -- Found the following Boost libraries: > >> > -- program_options > >> > -- filesystem > >> > -- system > >> > -- Check size of int > >> > -- Check size of int - done > >> > -- Could NOT find MKL (missing: MKL_INCLUDE_DIR MKL_Core_LINK_LIBRARY) > >> > -- Found Eigen3: /moto/kumar/users/cfk2120/eigen_build > >> > -- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") > >> > -- Checking for module 'fftw3' > >> > -- No package 'fftw3' found > >> > -- Could NOT find FFTW3 (missing: FFTW3_LIBRARY FFTW3_INCLUDE_DIR) > >> > -- Looking for assert.h > >> > -- Looking for assert.h - found > >> > -- Looking for math.h > >> > -- Looking for math.h - found > >> > -- Looking for stdio.h > >> > -- Looking for stdio.h - found > >> > -- Looking for stdlib.h > >> > -- Looking for stdlib.h - found > >> > -- Looking for string.h > >> > -- Looking for string.h - found > >> > -- Looking for C++ include cmath > >> > -- Looking for C++ include cmath - found > >> > -- Looking for C++ include fstream > >> > -- Looking for C++ include fstream - found > >> > -- Looking for C++ include functional > >> > -- Looking for C++ include functional - found > >> > -- Looking for C++ include iostream > >> > -- Looking for C++ include iostream - found > >> > -- Looking for C++ include limits > >> > -- Looking for C++ include limits - found > >> > -- Looking for C++ include list > >> > -- Looking for C++ include list - found > >> > -- Looking for C++ include map > >> > -- Looking for C++ include map - found > >> > -- Looking for C++ include ostream > >> > -- Looking for C++ include ostream - found > >> > -- Looking for C++ include sstream > >> > -- Looking for C++ include sstream - found > >> > -- Looking for C++ include stack > >> > -- Looking for C++ include stack - found > >> > -- Looking for C++ include stdexcept > >> > -- Looking for C++ include stdexcept - found > >> > -- Looking for C++ include string > >> > -- Looking for C++ include string - found > >> > -- Looking for C++ include vector > >> > -- Looking for C++ include vector - found > >> > -- Looking for sqrt in m > >> > -- Looking for sqrt in m - found > >> > -- Found EXPAT: /usr/lib64/libexpat.so (found version "2.1.0") > >> > -- Performing Test HAVE_AIX > >> > -- Performing Test HAVE_AIX - Failed > >> > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE) > >> > txt2tags not found, help cmake to find it by setting > TXT2TAGS_EXECUTABLE > >> > -- Found UnixCommands: /usr/bin/bash > >> > -- Boost version: 1.53.0 > >> > -- Found the following Boost libraries: > >> > -- program_options > >> > -- filesystem > >> > -- system > >> > -- Found Eigen3: /moto/kumar/users/cfk2120/eigen_build > >> > -- Found VOTCA_TOOLS: > >> > -- Checking for module 'libgromacs_d' > >> > -- No package 'libgromacs_d' found > >> > -- Checking for module 'libgromacs' > >> > -- No package 'libgromacs' found > >> > -- Looking for c++ gmx_version in > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so > >> > -- Looking for c++ gmx_version in > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so - found > >> > -- Looking for c++ gmx_is_single_precision in > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so > >> > -- Looking for c++ gmx_is_single_precision in > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so - found > >> > -- Looking for c++ gmx_is_double_precision in > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so > >> > -- Looking for c++ gmx_is_double_precision in > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so - not found > >> > -- Found GROMACS: > /moto/kumar/users/cfk2120/serial_gromacs/lib64/libgromacs.so (found > suitable version "2018.7", minimum required is "2018") > >> > -- Could NOT find GMX (missing: GMX_EXECUTABLE) > >> > -- Looking for C++ include algorithm > >> > -- Looking for C++ include algorithm - found > >> > -- Looking for C++ include iomanip > >> > -- Looking for C++ include iomanip - found > >> > -- Looking for C++ include numeric > >> > -- Looking for C++ include numeric - found > >> > -- Looking for C++ include cstdlib > >> > -- Looking for C++ include cstdlib - found > >> > -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) > (found version "") > >> > -- Could NOT find LMP (missing: LMP_EXECUTABLE) > >> > -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) > >> > -- Could NOT find CLANG_FORMAT: Found unsuitable version "0.0", but > required is at least "10" (found CLANG_FORMAT_EXECUTABLE-NOTFOUND) > >> > -- The following OPTIONAL packages have been found: > >> > > >> > * Git > >> > * UnixCommands > >> > * PkgConfig > >> > > >> > -- The following REQUIRED packages have been found: > >> > > >> > * EXPAT > >> > * Threads > >> > * Boost (required version >= 1.53.0) > >> > * Eigen3 (required version >= 3.3.0) > >> > * GROMACS (required version >= 2018) > >> > > >> > -- The following OPTIONAL packages have not been found: > >> > > >> > * MKL > >> > * FFTW3 > >> > * TXT2TAGS > >> > * HDF5 > >> > * Doxygen > >> > * CLANG_FORMAT (required version >= 10) > >> > > >> > -- Configuring done > >> > -- Generating done > >> > CMake Warning: > >> > Manually-specified variables were not used by the project: > >> > > >> > BUILD_CSAPPS > >> > LIBXC_INCLUDE_DIR > >> > LIBXC_LIBRARY > >> > > >> > -- > >> > Join us on Slack: https://join.slack.com/t/votca/signup > >> > --- > >> > You received this message because you are subscribed to the Google > Groups "votca" group. > >> > To unsubscribe from this group and stop receiving emails from it, > send an email to [email protected]. > >> > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/ce8d422f-b3a8-4bfa-9fb4-da92af09fd72n%40googlegroups.com > . > >> > >> > >> > >> -- > >> Christoph Junghans > >> Web: http://www.compphys.de > > > > -- > > Join us on Slack: https://join.slack.com/t/votca/signup > > --- > > You received this message because you are subscribed to the Google > Groups "votca" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/votca/69af1833-1d78-4aba-b505-bbd03cc05197n%40googlegroups.com > . > > > > -- > Christoph Junghans > Web: http://www.compphys.de > -- Join us on Slack: https://join.slack.com/t/votca/signup --- You received this message because you are subscribed to the Google Groups "votca" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/votca/cec11f47-2f05-48a3-a199-6547dcb0a06an%40googlegroups.com.
