PubMedCentral: https://en.wikipedia.org/wiki/PubMed_Central
On Thu, Oct 23, 2014 at 12:07 AM, Aaron Halfaker <[email protected]> wrote: > Ahh. What are pmcs? > > On Wed, Oct 22, 2014 at 5:06 PM, Maximilian Klein <[email protected]> > wrote: > >> Out of interest, my regex was >> >> pmc\s*\=\s*(.*?)[\|\}] >> >> and then also >> >> pmid\s*\=\s*(.*?)[\|\}] >> >> >> with ignorecase flag set on. >> >> Make a great day, >> Max Klein ‽ http://notconfusing.com/ >> >> On Wed, Oct 22, 2014 at 12:48 PM, Aaron Halfaker < >> [email protected]> wrote: >> >>> Hey folks, >>> >>> Somehow I missed this thread, but I've already addressed this request on >>> the Village Pump[1]. See: >>> >>> See. >>> http://datasets.wikimedia.org/public-datasets/enwiki/etc/pmids.articles.20141008.tsv >>> >>> >>> I extracted PMIDs with the following regex: /\bpmid *= *[0-9]+\b/i >>> >>> It includes page_id, page_namespace, page_title, rev_id (most recent), >>> pmid in TAB separated values. >>> >>> Let me know if you have questions or if you think the regex matching >>> strategy is insufficient. It's pretty quick to take another pass. >>> >>> 1. >>> https://en.wikipedia.org/wiki/Wikipedia:Village_pump_(technical)#Extracting_PMIDs >>> >>> On Wed, Oct 22, 2014 at 1:27 PM, Maximilian Klein <[email protected]> >>> wrote: >>> >>>> Jake, >>>> I have script that does this already for DOIs, Its was one-line change >>>> to make. These files should answer what you were looking for. >>>> >>>> >>>> https://raw.githubusercontent.com/notconfusing/listiness/pmc/pmc_list.txt >>>> >>>> https://raw.githubusercontent.com/notconfusing/listiness/pmc/pmid_list.txt >>>> >>>> In the future you can tell them to use halfak's >>>> https://pythonhosted.org/mediawiki-utilities/ >>>> This is the code I used to get those lists. >>>> https://github.com/notconfusing/listiness/commit/e140ce9202b9c1098dec40ca1da3ff135fd8c520 >>>> >>>> Make a great day, >>>> Max Klein ‽ http://notconfusing.com/ >>>> >>>> On Mon, Oct 20, 2014 at 9:20 PM, Andrew G. West < >>>> [email protected]> wrote: >>>> >>>>> Jake, >>>>> >>>>> Yes, its a rather straightforward parse based on the citation format >>>>> which Jeremy described. Doc James and I already have this coded up for a >>>>> soon to be published [[WP:MED]] readership/editorship paper. >>>>> >>>>> Searching for PMID's in the entirety of the Wikipedia article base >>>>> would be a bit time consuming -- but if one needs to pull down only >>>>> articles in WikiProject Medicine, for example, I am also able to help on >>>>> that front. >>>>> >>>>> Perhaps we'll take this offline, but if anyone else is interested in >>>>> the dirty details, feel free to contact one of us off-list. -AW >>>>> >>>>> -- >>>>> Andrew G. West, PhD >>>>> http://www.andrew-g-west.com >>>>> >>>>> >>>>> >>>>> On 10/20/2014 11:57 PM, Jake Orlowitz wrote: >>>>> >>>>>> Hi folks, >>>>>> >>>>>> Relaying a question from a Stanford medical researcher: >>>>>> >>>>>> "Do you know if it is possible to extract PubMed ID (PMID) or PMCIDs >>>>>> from Wiki references? Furthermore, could you dump those IDs out into >>>>>> a >>>>>> list for analysis?" >>>>>> >>>>>> Best, >>>>>> Jake Orlowitz (Ocaasi) >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Wiki-research-l mailing list >>>>>> [email protected] >>>>>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>>>>> >>>>>> >>>>> >>>>> _______________________________________________ >>>>> Wiki-research-l mailing list >>>>> [email protected] >>>>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>>>> >>>> >>>> >>>> _______________________________________________ >>>> Wiki-research-l mailing list >>>> [email protected] >>>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>>> >>>> >>> >>> _______________________________________________ >>> Wiki-research-l mailing list >>> [email protected] >>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>> >>> >> >> _______________________________________________ >> Wiki-research-l mailing list >> [email protected] >> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >> >> > > _______________________________________________ > Wiki-research-l mailing list > [email protected] > https://lists.wikimedia.org/mailman/listinfo/wiki-research-l > >
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