Thanks Jody, but I know what PubMed Central is. Here, I was (unclearly) asking about the meaning of the "pmc" field.
I talked to Max on IRC. He said like "pmc" is an old legacy field name that corresponds to "pmid", so they can be used interchangably. I've updated my regex to be /\bpm(id|c) *= *([0-9]+)\b/i and restarted my run over the 2014-10-08 XML dump. -Aaron On Wed, Oct 22, 2014 at 5:58 PM, Jodi Schneider <[email protected]> wrote: > PubMedCentral: https://en.wikipedia.org/wiki/PubMed_Central > > > On Thu, Oct 23, 2014 at 12:07 AM, Aaron Halfaker <[email protected]> > wrote: > >> Ahh. What are pmcs? >> >> On Wed, Oct 22, 2014 at 5:06 PM, Maximilian Klein <[email protected]> >> wrote: >> >>> Out of interest, my regex was >>> >>> pmc\s*\=\s*(.*?)[\|\}] >>> >>> and then also >>> >>> pmid\s*\=\s*(.*?)[\|\}] >>> >>> >>> with ignorecase flag set on. >>> >>> Make a great day, >>> Max Klein ‽ http://notconfusing.com/ >>> >>> On Wed, Oct 22, 2014 at 12:48 PM, Aaron Halfaker < >>> [email protected]> wrote: >>> >>>> Hey folks, >>>> >>>> Somehow I missed this thread, but I've already addressed this request >>>> on the Village Pump[1]. See: >>>> >>>> See. >>>> http://datasets.wikimedia.org/public-datasets/enwiki/etc/pmids.articles.20141008.tsv >>>> >>>> >>>> I extracted PMIDs with the following regex: /\bpmid *= *[0-9]+\b/i >>>> >>>> It includes page_id, page_namespace, page_title, rev_id (most recent), >>>> pmid in TAB separated values. >>>> >>>> Let me know if you have questions or if you think the regex matching >>>> strategy is insufficient. It's pretty quick to take another pass. >>>> >>>> 1. >>>> https://en.wikipedia.org/wiki/Wikipedia:Village_pump_(technical)#Extracting_PMIDs >>>> >>>> On Wed, Oct 22, 2014 at 1:27 PM, Maximilian Klein <[email protected]> >>>> wrote: >>>> >>>>> Jake, >>>>> I have script that does this already for DOIs, Its was one-line change >>>>> to make. These files should answer what you were looking for. >>>>> >>>>> >>>>> https://raw.githubusercontent.com/notconfusing/listiness/pmc/pmc_list.txt >>>>> >>>>> https://raw.githubusercontent.com/notconfusing/listiness/pmc/pmid_list.txt >>>>> >>>>> In the future you can tell them to use halfak's >>>>> https://pythonhosted.org/mediawiki-utilities/ >>>>> This is the code I used to get those lists. >>>>> https://github.com/notconfusing/listiness/commit/e140ce9202b9c1098dec40ca1da3ff135fd8c520 >>>>> >>>>> Make a great day, >>>>> Max Klein ‽ http://notconfusing.com/ >>>>> >>>>> On Mon, Oct 20, 2014 at 9:20 PM, Andrew G. West < >>>>> [email protected]> wrote: >>>>> >>>>>> Jake, >>>>>> >>>>>> Yes, its a rather straightforward parse based on the citation format >>>>>> which Jeremy described. Doc James and I already have this coded up for a >>>>>> soon to be published [[WP:MED]] readership/editorship paper. >>>>>> >>>>>> Searching for PMID's in the entirety of the Wikipedia article base >>>>>> would be a bit time consuming -- but if one needs to pull down only >>>>>> articles in WikiProject Medicine, for example, I am also able to help on >>>>>> that front. >>>>>> >>>>>> Perhaps we'll take this offline, but if anyone else is interested in >>>>>> the dirty details, feel free to contact one of us off-list. -AW >>>>>> >>>>>> -- >>>>>> Andrew G. West, PhD >>>>>> http://www.andrew-g-west.com >>>>>> >>>>>> >>>>>> >>>>>> On 10/20/2014 11:57 PM, Jake Orlowitz wrote: >>>>>> >>>>>>> Hi folks, >>>>>>> >>>>>>> Relaying a question from a Stanford medical researcher: >>>>>>> >>>>>>> "Do you know if it is possible to extract PubMed ID (PMID) or PMCIDs >>>>>>> from Wiki references? Furthermore, could you dump those IDs out >>>>>>> into a >>>>>>> list for analysis?" >>>>>>> >>>>>>> Best, >>>>>>> Jake Orlowitz (Ocaasi) >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Wiki-research-l mailing list >>>>>>> [email protected] >>>>>>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>>>>>> >>>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Wiki-research-l mailing list >>>>>> [email protected] >>>>>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Wiki-research-l mailing list >>>>> [email protected] >>>>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>>>> >>>>> >>>> >>>> _______________________________________________ >>>> Wiki-research-l mailing list >>>> [email protected] >>>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>>> >>>> >>> >>> _______________________________________________ >>> Wiki-research-l mailing list >>> [email protected] >>> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >>> >>> >> >> _______________________________________________ >> Wiki-research-l mailing list >> [email protected] >> https://lists.wikimedia.org/mailman/listinfo/wiki-research-l >> >> > > _______________________________________________ > Wiki-research-l mailing list > [email protected] > https://lists.wikimedia.org/mailman/listinfo/wiki-research-l > >
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