My understanding is that scenario will definitely be supported. I have no idea 
if it is already or if the parser functions only currently work in articles.

Date: Wed, 17 Apr 2013 11:17:43 +0530
From: [email protected]
To: [email protected]
Subject: Re: [Wikidata-l] Regarding wikidata inclusion syntax

Hi ,
Thanks Michael for the info. Yes, the properties in the templates have to be 
yet created. 
http://www.wikidata.org/wiki/Wikidata:Molecular_Biology_task_force/Properties. 
We already have a bot in python to query wikipedia.

I wanted to know whether the parser functions{{property:...}}  are being 
evaluated after a template is transcluded.
Hope to see that this feature would be implemented soon.

 Ideally, we just want {{GNF_proteinBox}} at the beginning of the wiki article. 
If the parser functions would not be supported, then what would be the best 
approach? Other than passing arguments to {{GNF_ProteinBox}} in the wiki gene 
article. This would increase the length of each wiki gene article.



Thanks in advance,
Chinmay


On Wed, Apr 17, 2013 at 12:48 AM, Michael Hale <[email protected]> wrote:




If you are saying that the parser functions ({{#property:...}}) aren't being 
evaluated after the template is transcluded then I guess the feature isn't 
fully implemented yet.


From: [email protected]
To: [email protected]
Date: Tue, 16 Apr 2013 15:11:35 -0400

Subject: Re: [Wikidata-l] Regarding wikidata inclusion syntax




Hey, that's a great project. The current situation with ProteinBoxBot is not 
ideal. We don't want to create a separate template for every protein. I suppose 
they do that now to make the articles slightly shorter, but Wikidata will allow 
us to accomplish the same thing without the confusing extra templates and 
ultimately to synchronize the infobox data across different language 
Wikipedias. With Wikidata the idea is that you will eventually just be able to 
write {{GNF Protein box}} at the top of the protein article and you will get 
what you want. If you look at our current list of biology properties though, 
there are still some that need to be added to fully support protein box.
http://www.wikidata.org/wiki/Wikidata:List_of_properties#Biology_.2F_Biologie_.2F_Biologie_.2F_.D0.91.D0.B8.D0.BE.D0.BB.D0.BE.D0.B3.D0.B8.D1.8F

You can start adding data for the current properties already though. I just 
added the Entrez ID to adenosine deaminase. http://www.wikidata.org/wiki/Q356093

A list of human proteins on Wikipedia is here. 
http://en.wikipedia.org/wiki/Category:Human_proteins You can access the list 
through code by using a MediaWiki API request like this: 
http://en.wikipedia.org/w/api.php?action=query&list=categorymembers&cmtitle=Category:Human_proteins&format=json&cmlimit=500
The use cmcontinue to get them in pages of 500 at a time until you have all 
10000.
To go from article title to Wikidata item use something like 
this:http://wikidata.org/w/api.php?action=wbgetentities&sites=enwiki&titles=Adenosine%20deaminase&languages=en&format=json

Then you'll want to propose a bot to automatically add properties. 
http://www.wikidata.org/wiki/Wikidata:Requests_for_permissions/Bot

The property inclusion syntax refers to the item on the article that 
transcludes the template. So all of the extra templates that ProteinBoxBot is 
currently making would all have identical wiki markup if it was fully using 
Wikidata.
Date: Tue, 16 Apr 2013 19:46:25 +0530
From: [email protected]
To: [email protected]

Subject: [Wikidata-l] Regarding wikidata inclusion syntax

Hi,
 
I am Chinmay Naik, an undergrad in CS at Bangalore,India. I hope to contribute 
to CrowsourcingBiology through GSOC 2013. The project i am interested is 
"convert bot to write to wikidata". Currently the bot does this     database 
---> wikipedia. The proposal is this    database ----> wikidata -----> 
wikipedia.



I have the basic idea of how to capture gene info onto wikidata. I was 
wondering about the inclusion syntax of wikidata. I had a look at the current 
inclusion of wikidata v0.3 meta. Some things are unclear to me. How best it is 
to map wikidata items on to wiki articles.??



Currently, the bot uses templates. The template structure is 
http://en.wikipedia.org/wiki/Template:GNF_Protein_box. The bot fills a various 
gene templates http://en.wikipedia.org/wiki/Template:PBB/100. These gene 
templates are included on gene wikipedia articles.



I tried to work out on the italian wikipedia. When i try to include a 
template(mapped to wikidata item) onto an wiki article, the wikidata properties 
were not displayed.
So is it not possible to include wikidata items in template namespace?? 


So transclusion where data is retreived from wikidata item not supported??   

Kindly pardon me if this is not the right mailing list to post to about this.

Thanks in advance,


Chinmay




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