Googling 'msdn appdata' brought up 
http://blogs.msdn.com/b/patricka/archive/2010/03/18/where-should-i-store-my-data-and-configuration-files-if-i-target-multiple-os-versions.aspx
 which might be useful.

> From: Katherine Moss [mailto:katherine.m...@gordon.edu]
> Sent: Wednesday, November 28, 2012 8:16 PM
> 
> Thanks.  I'll have to look at the certificate properties then and see
> if I can glean any more information on why the cert needs to be there.
> I always found it odd, but I also know that it is unprofessional to
> push professional developers especially if the source code is not
> publically available.  And in this case, it is a commercial product,
> and just because the dev works for my best friend doesn't really mean
> much; it doesn't mean that I'll use him as my go-to guy.  But anyway,
> then can somebody tell me why certain applications choose to place some
> stuff in app data while some of it is in program files?  Is that
> decision made  based on the needed permissions of the application, or
> is it based on the type of information stored in the directory.  For
> instance, Malwarebytes uses App Data to store logs and other things, so
> I'd assume that Malwarebytes corp thought it too much work to require
> admin priveleges just to install a log directory, right?  And you know
> something even !
>  more interesting?  I think it gets even more dicy when the person
> running the application chooses their own custom directory for the
> application installation.
>
> -----Original Message-----
> From: Rob Mensching [mailto:r...@robmensching.com]
> Sent: Tuesday, November 27, 2012 11:37 PM
> 
> App Data can be non-elevated writable. Program Files requires elevation
> to be placed there. If you go to Program Files you don't have to worry
> about your application being tampered with but an App Data install can
> happen without elevation.
> 
> The certificate comment doesn't make sense to me.
> 
> On Tue, Nov 27, 2012 at 8:12 PM, Katherine Moss
> <katherine.m...@gordon.edu>wrote:
> 
> > I'm just wondering this since I have a program that installs to app
> > data by default rather than program files, and it's developer says
> > that the change of default directory has to do with special
> > permissions needed.  I mean, what is the point of the app data folder
> > anyway? I'd never understood it; why not just leave everything in one
> > directory or the other?  The developer of this application says that
> > the directory being app data also has something to do with a
> > certificate or something.  Could you folks shed any light on this?

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