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http://issues.apache.org/jira/browse/XALANJ-1966?page=comments#action_12316211 
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Chris Bowditch commented on XALANJ-1966:
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I have been trying to work out why xsl:comment did not appear to work when 
generating HTML for a long while now. Its not immediately obvious from the bug 
description that this bug is the cause. The precise re-creation steps are:

1) perform a SAX based transform that generates HTML
2) Specify a destination systemId and publicId

In these circumstances, xsl:comment has no affect on output! The attached patch 
fixes the issue.

> XSL Transformation drops content inside xsl:comment tags.
> ---------------------------------------------------------
>
>          Key: XALANJ-1966
>          URL: http://issues.apache.org/jira/browse/XALANJ-1966
>      Project: XalanJ2
>         Type: Bug
>   Components: Serialization
>     Versions: CurrentCVS
>  Environment: Windows 2000. Xalan 2.6.0
>     Reporter: Yash Talwar
>  Attachments: PatchForApacheCode.txt, patch.1966.txt
>
> With Xalan 2.6.0, when a simple stylesheet, say test.xsl and input xml, say 
> test.xml is used, transformation works fine.
> If simple test.xsl file include or import other stylesheets and 
> imported/included stylesheets import/include more stylesheets, then, 
> transformation works; however, in the final output (html), content inside 
> xsl:comment tags are dropped.  I have a big application that produced this 
> problem.  I cannot provide a simpler version of the testcase.  However, I 
> have resolved the issue by making one minor change in the code.  I will 
> provide the patch that resolved my problem.

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