From the log you provided, it seems that xmlsec was configured
with --prefix=/usr
./configure --prefix=/usr --sysconfdir=/etc
--mandir=/usr/share/man --with-nss=/usr
--with-nspr=/usr --libdir=/usr/lib64
Thus the behaviorists you observed. Since this command line was
produced from .spec file you and someone else modified, I probably
can not help you with this.
Try to download xmlsec source archive and do usual
./configure; make; make install
procedure.
Aleksey
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