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Hello Gary-- > I am using the Fit and RMSD objects to fit structures to a starting > structure as shown in the example python/tests/fitTest.py . However, it > seems to be incredibly slow (it takes minutes to fit 50 structures with > CA overlay and 150 residues...) is this expected That is not expected. Something's wrong- I suspect an I/O issue. Which platform are you running on? Is you send your script I should be able to help. regards-- Charles -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.6 (GNU/Linux) Comment: Processed by Mailcrypt 3.5.8+ <http://mailcrypt.sourceforge.net/> iD4DBQFG+/E7PK2zrJwS/lYRAo3qAJY+pZjFSIUaa9ITESHkKLTiNgi2AJ9gFjTJ 1D7KyS5qBn4AJZHvzUirjA== =EJIR -----END PGP SIGNATURE-----
