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Hello Nah--

> The system architecture is : X86_64 (Linux 64bit). and have 'pasted' the
> script below your comments.

Are you running on a cluster, or locally?

>     protocol.genExtendedStructure("gb1_extended_%d.pdb" % seed)
> 
> the last command is what is causing 'some' of the processes to irregularly
> exit.
> If I remove the argument (gb1_extended_%d.pdb" % seed), will some of the
> multiple processes still attempt to write ?
> 

does it work ok if you change the line to
protocol.genExtendedStructure()

??

thanks--
Charles
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