One last update - I have managed to get things under control now. I had to blow away the .pickle file in the device directory for each affected device to get the snmp alerts to go away. I also removed the .rrd files on each interface for the info that wasn't being collected to be tidy. In the case of the vlan interfaces I mentioned earlier, this was ifInErrors_ifInErrors.rrd and ifOutErrors_ifOutErrors.rrd. Presto! No more blue snmp alerts after removing them and restarting zenoss.
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