On Wed, Jun 12, 2013 at 9:56 PM, Wei Tang <tangwei1...@gmail.com> wrote: > Hi Henrik, > > Would you tell me where I can find the information of human build for the > arrays? > it seems you used hg18? am I correct?
Which genome version you use depends on which annotationData/ files you use. Here are the ones we've built and shared over time: http://aroma-project.org/data/annotationData/chipTypes/Mapping50K_Hind240/ http://aroma-project.org/data/annotationData/chipTypes/Mapping50K_Xba240/ http://aroma-project.org/data/annotationData/chipTypes/GenomeWideSNP_5/ http://aroma-project.org/data/annotationData/chipTypes/GenomeWideSNP_6/ As you see, there a few different options. If not available, it's also possible to build your own from Affymetrix NetAffx files. Hope this helps /Henrik > > Many thanks, > > Wei > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/groups/opt_out. > > -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.
