I don't know anything about the OncoScan assay, but from looking at http://www.affymetrix.com/catalog/131419/AFFY/OncoScan%26%23174%3B+FFPE+Assay+Kit#1_3
it doesn't look like it's a classical Affymetrix chip. Basically, if CEL files are not produced, then Aroma almost certainly won't be able to process the data. Also, almost everything in Aroma requires a CDF, so unless a CDF can be obtained or created, that is also a show stopped. My $.02 /Henrik On Tue, Oct 20, 2015 at 2:16 PM, Keith C <keithchi...@gmail.com> wrote: > Hi, > > did you ever figure out how to process Oncoscan arrays using aroma? > > thanks, > > -keith > > > On Monday, September 15, 2014 at 4:11:50 AM UTC-7, mbaudis wrote: >> >> Hi, >> >> has anybody processed Affymetrix Oncoscan arrays in aroma, and has >> generated the relevant CDF ... files? >> >> http://www.affymetrix.com/catalog/131419/AFFY/OncoScan+FFPE+Assay+Kit#1_3 >> >> >> Thanks, >> >> Michael. > > -- > -- > When reporting problems on aroma.affymetrix, make sure 1) to run the latest > version of the package, 2) to report the output of sessionInfo() and > traceback(), and 3) to post a complete code example. > > > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group with website http://www.aroma-project.org/. > To post to this group, send email to aroma-affymetrix@googlegroups.com > To unsubscribe and other options, go to http://www.aroma-project.org/forum/ > > --- > You received this message because you are subscribed to the Google Groups > "aroma.affymetrix" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to aroma-affymetrix+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/d/optout. -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
