Hi Henrik, Very similar to the issue above, I have checked the file size, which is fine. However this is the error I still encounter, any thoughts?
Thanks ck > list.files(path) [1] "GenomeWideSNP_6,Full,na33,hg19,dbsnp137,HB20140118.ufl" [2] "GenomeWideSNP_6,Full,na33,hg19,dbsnp137,HB20140118.ugp" [3] "GenomeWideSNP_6,Full.cdf" [4] "GenomeWideSNP_6,HB20080710.acs" > gi<-getGenomeInformation(cdf) [2018-05-30 16:14:36] Exception: Failed to retrieve genome information for this chip type: GenomeWideSNP_6 at #02. getGenomeInformation.AffymetrixCdfFile(cdf) - getGenomeInformation.AffymetrixCdfFile() is in environment 'aroma.affymetrix' at #01. getGenomeInformation(cdf) - getGenomeInformation() is in environment 'aroma.affymetrix' Error: Failed to retrieve genome information for this chip type: GenomeWideSNP_6 ├── annotationData │ └── chipTypes │ └── GenomeWideSNP_6 │ ├── GenomeWideSNP_6,Full,na33,hg19,dbsnp137,HB20140118.ufl │ ├── GenomeWideSNP_6,Full,na33,hg19,dbsnp137,HB20140118.ugp │ ├── GenomeWideSNP_6,Full.cdf │ └── GenomeWideSNP_6,HB20080710.acs On Tuesday, 10 April 2012 09:19:31 UTC+1, Frederic Foucault wrote: > > Hi Henrik, Hi Pierre, > Thanks a lot for your precious helps. > > Henrik , you are right: two files were not ofthe correct size: > "GenomeWIDE....ufl" and "GenomeWIDE....ugp". I downloaded them again from > aroma.org > Now, i will do the complete run of ACNE test of the GSE14996 dataset. > Other questions will come... > > Here is my R session info > > R version 2.14.0 (2011-10-31) > Platform: x86_64-pc-mingw32/x64 (64-bit) > > locale: > [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United > States.1252 > [3] LC_MONETARY=English_United States.1252 > LC_NUMERIC=C > [5] LC_TIME=English_United States.1252 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] ACNE_0.5.0 MASS_7.3-17 aroma.affymetrix_2.5.0 > [4] affxparser_1.26.4 aroma.apd_0.2.0 R.huge_0.3.0 > [7] aroma.core_2.5.0 aroma.light_1.22.0 R.rsp_0.7.5 > [10] R.cache_0.6.1 R.filesets_1.1.5 digest_0.5.2 > [13] R.utils_1.12.1 matrixStats_0.4.4 R.oo_1.9.3 > [16] R.methodsS3_1.2.2 > -- -- When reporting problems on aroma.affymetrix, make sure 1) to run the latest version of the package, 2) to report the output of sessionInfo() and traceback(), and 3) to post a complete code example. You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group with website http://www.aroma-project.org/. To post to this group, send email to aroma-affymetrix@googlegroups.com To unsubscribe and other options, go to http://www.aroma-project.org/forum/ --- You received this message because you are subscribed to the Google Groups "aroma.affymetrix" group. To unsubscribe from this group and stop receiving emails from it, send an email to aroma-affymetrix+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.