Hi Scott and Tim, Thanks a lot! It works with the development version. Ying
---- Original message ---- >Date: Tue, 18 Aug 2009 08:19:05 +0100 >From: Tim Carver <t...@sanger.ac.uk> >Subject: Re: [Artemis-users] invalid genbank file >To: Scott Beatson <s.beat...@uq.edu.au>, "<ych...@uga.edu>" <ych...@uga.edu> >Cc: <artemis-users@sanger.ac.uk> > > Hi Ying > > Or use the development version: > > http://www.sanger.ac.uk/Software/Artemis/#development > > Which has a fix for that. > > Regards > Tim > > On 8/18/09 5:27 AM, "Scott Beatson" > <s.beat...@uq.edu.au> wrote: > > Hi Ying, > > I work-around this by removing the header line > that starts with "DBLINK" from the GenBank file - > this line seems to be the cause of the problem. > > Alternatively you could download the relevant > EMBL-formatted file from > here: http://www.ebi.ac.uk/genomes/ > > Cheers > Scott > > On 18/08/2009, at 1:26 PM, <ych...@uga.edu> > <ych...@uga.edu> wrote: > > Hi, > Dose anyone try to download genbank format > sequences for Artemis entry recently? Artemis > cound't read genbank file downloaded from NCBI > correctly. I got a lot of "N"s in the sequence > and I couldn't see those CDS arrows either. > > Thanks! > > Ying > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users > > > > -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= > Scott Beatson PhD > Group Leader/ARC Research Fellow > School of Chemistry & Molecular Biosciences > University of Queensland > Brisbane, QLD 4072, Australia > > Tel: +61 7 33654863 > Fax: +61 7 33654699 > http://profiles.bacs.uq.edu.au/Scott.Beatson.html > =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= > > > > ------------------------------------------------- > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users > > -- The Wellcome Trust Sanger Institute is operated > by Genome Research Limited, a charity registered in > England with number 1021457 and a company registered > in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
