Hi Alex For database type hyperlinks that are picked up in the feature editor you can add them to the Artemis options file:
http://www.sanger.ac.uk/Software/Artemis/v11/manual/options-descriptions.htm l#OPTIONS-HYPERLINKS You could add something like this to that: FILE file:///Users/alex/ Artemis is also designed so that you can run BLAST (FASTA etc) from the Run menu. This runs the appropriate script in the etc¹ directory. It creates a link in the annotation that would look something like this: /blastp_file="blastp/A1234.embl.seq.00001.out" You can view these results then from the view menu. There is a detailed description in the manual that may help: http://www.sanger.ac.uk/Software/Artemis/v11/manual/runmenu.html Regards Tim On 9/1/09 9:45 AM, "Bossers, Alex" <alex.boss...@wur.nl> wrote: > Hi All, > I have been using Artemis/ACT with great joy and have adapted most of my > scripts to output embl compatible data for viewing/annotation by these tools > on whole genomes. This includes blast reports of geneMArk identified ORFs. > Is there any way to incorporate a working hyperlink or a link to an external > file? Lets say we open a feature (ctrl-V) of a blisthit that is contains a > WORKING hyperlink to a more detailed file describing the hit, having its > alignments and so. The external files are not the problem. I have those but I > can¹t get any hyperlink to work (either in the annotation or maybe even better > as a clickable object in Artemis/ACT). Is there such a feature and if not, is > it planned? Would make a great addition with more spinoff than blasthits, > thinking on accessions numbers, literature > Any light in this matter would be helpful. > Thanks > Alex > > > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
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