Hi Tim,
On 23/04/2010 Friday, April 23, 09:49, "Tim Carver" <t...@sanger.ac.uk>
wrote:
> you could try changing the template-basicfeature resultmap to:
>
> <result property="uniqueName" column="uniquename"
> javaType="java.lang.String"/>
One thing that's useful to us is to distinguish plasmid [SO:0000155]
sequences from chromosome [SO:0000340] sequences for an organism - we can do
this by modifying Feature.xml like so:
<sql id="source_feature_cvterm_names">
cvterm.name LIKE '%chromosome%' OR cvterm.name LIKE '%sequence%'
OR cvterm.name LIKE '%plasmid%' OR
cvterm.name IN ('supercontig', 'ultra_scaffold',
'golden_path_region', 'contig')
Could this change (or maybe an addition to the cvterm.name IN test) also be
incorporated into the github source?
Cheers,
L.
--
Dr Leighton Pritchard MRSC
D131, Plant Pathology Programme, SCRI
Errol Road, Invergowrie, Perth and Kinross, Scotland, DD2 5DA
e:lpr...@scri.ac.uk w:http://www.scri.ac.uk/staff/leightonpritchard
gpg/pgp: 0xFEFC205C tel:+44(0)1382 562731 x2405
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