Hi Leighton
Ok. I have added plasmid to the list of cvterm.name's that it looks for.
Regards
Tim
On 4/23/10 4:39 PM, "Leighton Pritchard" <lpr...@scri.ac.uk> wrote:
> Hi Tim,
>
> On 23/04/2010 Friday, April 23, 09:49, "Tim Carver" <t...@sanger.ac.uk>
> wrote:
>
>> you could try changing the template-basicfeature resultmap to:
>>
>> <result property="uniqueName" column="uniquename"
>> javaType="java.lang.String"/>
>
> One thing that's useful to us is to distinguish plasmid [SO:0000155]
> sequences from chromosome [SO:0000340] sequences for an organism - we can do
> this by modifying Feature.xml like so:
>
> <sql id="source_feature_cvterm_names">
> cvterm.name LIKE '%chromosome%' OR cvterm.name LIKE '%sequence%'
> OR cvterm.name LIKE '%plasmid%' OR
> cvterm.name IN ('supercontig', 'ultra_scaffold',
> 'golden_path_region', 'contig')
>
> Could this change (or maybe an addition to the cvterm.name IN test) also be
> incorporated into the github source?
>
> Cheers,
>
> L.
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