Hi Shahar This can be done conveniently via the command line. You can overlay multiple entries using this syntax:
art file1.embl + file2.tab Also in Artemis v12 it is now possible to add user plots from the command line using the JVM userplot option, e.g. art -Duserplot=/pathToFile/userPlot and for multiple plots this is comma separated art -Duserplot='/pathToFile/userPlot1,/pathToFile/userPlot2' (it can also read the plots from URL's). To open and center at a base location you can use the offset option. Combining these options: art -Duserplot=userplot1 -Doffset=9000 foo.embl + file.tab + file2.tab Regards Tim On 5/3/10 10:21 AM, "Shahar ." <shahar...@gmail.com> wrote: > Hello, > > I'm quite new to Artemis so I'm sorry if this is a novice question. > > Is it possible to write a "workspace configuration" file - including required > entries, graphs, maybe even location in the genome to focus on, etc. - then > load it to Artemis and get the wanted view with all files loaded? > > I'm reviewing lots of data from different organisms. In each case, I need to > do the same set of operations again (open file, open entries, load user > graphs...). I can quite easily write a "configuration file" for each organism, > and it would be very convenient if I could then load this single file in > Artemis instead of setting everything manually. > > An alternative would be to control files Artemis open via the comman line > arguments, but I didn't see any relevant ones in the Artemis manual. > > Thank you, > Shahar > > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
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