Hi Bernd Thank you for your message. There are command line options for running Artemis and setting various display parameters, e.g. you can open sequences and feature tables from different files from the command line. The options are documented in the user manual. There is no programmer manual for Artemis but the majority of the code is well documented. If you download the software from the Artemis home page or from GitHub you can use the 'Makefile' to generate javadocs.
Regards Tim On 2/20/11 8:26 AM, "Bernd Jagla" <bernd.ja...@pasteur.fr> wrote: > Hi, > > I just got aware of the Artemis project and am quite excited about it. > I am using KNIME (knime.org) a workflow management software that is also > JAVA based and develop functionality for using KNIME on NGS and HCA > related problems. My questions would be: is it possible to integrate > ARTEMIS with other software? > Is there an API? > Is there a way control what it is displaying from outside the Artemis > application (like e.g. IGV)? > Can you please give me some pointers on where to start looking for further > instructions (beyond the manual) like some introductions for > programmers... > > Please let me know if you have any other suggestions/comments on this > project. > > Kind regards, > > Bernd > > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
