> > To answer your question then, there is no way in 0.5 to turn > back to the > old behaviour. It might be possible in new versions to > enable this, but > currently I am against the idea. >
Running the file through pdbset solves the missing element identifier problem -- not elegant, but quick and easy. Running the remediator script from the Richardson lab is a good solution too for other pdb version related issues (e.g. when 0.5 coot draws bonds between vicinal H atoms with old-style names): http://kinemage.biochem.duke.edu/software/remediator.php Another remark on colours in 0.5: redhat8 (non-pythonic) binaries on RHEL4 seem to have lost colours -- the model/fit/refine window, scripting window etc are all grey. JED
