Miguel Ortiz Lombardia wrote:
Dear all,

Is there a way to ask Coot to write pdb coordinate files with nucleic acid 
residue names in 'standard' PDB format? That is: DA, DC, DG, DT, A, C, G, T...

No.  It's on the list.  I will use the PDB-approved nomenclature.

Sorry, this may have been solved already, but I just found an old message 
(http://www.ysbl.york.ac.uk/~emsley/coot/mbox-2006/0227.html) with a perl 
solution put forward by Bill Scott. I wonder if a preference setting could be 
changed so there is no need to resort to external file editing.

Not yet.

Paul.

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