If I might add as well to Oliver's suggestions, an option to jump to questionable/bad ramachandrans would be useful at the validation stage. A list like the residues with missing atoms / residues with alt confs functions would be a quick way to inspect these without having to track them down in a busy 2d plot.
Shane Caldwell McGill University On Mon, May 25, 2015 at 11:05 AM, Oliver Clarke <oc2...@columbia.edu> wrote: > Also along the same lines, I would love to see a "local ramachandran" - a > ramachandran plot, but only displaying those residues within a certain > distance from the center of rotation, say 20 Å. The ramachandran plot is > very handy for validation and identification of troublesome regions, but it > gets very crowded for large, multi chain structures, and I feel like this > would be a handy aid during refinement. > > Cheers, > Oliver. >
