Hi Jan - yes, that is true, of course - but when you have 1000+ residues the plot gets rather crowded and this becomes not as practical.
Cheers, Oliver. On Wed, 27 May 2015 10:54:55 +0200, Jan Stransky <stran...@ibt.cas.cz> wrote: >You can already click on residue symbols in Coot's Ramachandran, which >will focus you on that residue... A table you can get from Molprobity >webservice, but it is not clickable though... >Cheers, >Jan > >On 05/25/2015 06:22 PM, Shane Caldwell wrote: >> If I might add as well to Oliver's suggestions, an option to jump to >> questionable/bad ramachandrans would be useful at the validation >> stage. A list like the residues with missing atoms / residues with alt >> confs functions would be a quick way to inspect these without having >> to track them down in a busy 2d plot. >> >> Shane Caldwell >> McGill University >> >> On Mon, May 25, 2015 at 11:05 AM, Oliver Clarke <oc2...@columbia.edu >> <mailto:oc2...@columbia.edu>> wrote: >> >> Also along the same lines, I would love to see a "local >> ramachandran" - a ramachandran plot, but only displaying those >> residues within a certain distance from the center of rotation, >> say 20 Å. The ramachandran plot is very handy for validation and >> identification of troublesome regions, but it gets very crowded >> for large, multi chain structures, and I feel like this would be a >> handy aid during refinement. >> >> Cheers, >> Oliver. >> >> > >-- >Jan Stransky, PhD student >Institute of Biotechnology, CAS >Laboratory of structure and function of biomolecules >Nad Safinou II 366 >Vestec >Czech Republic > >Tel.: +420226201570 > >
