On 31/01/17 13:26, mesters wrote:
Hi,
I currently run ccp4 version 7.0.028 on a Mac Air with OS X 10.11.6
and experience no problems if start Coot from within qtRView (model
and maps are displayed correctly)
If a start Coot by itself and load a PDB model and then use "auto open
MTZ" and select the model in order to calculate the maps, it comes up
with the following:
/In /Applications/ccp4-7.0/share/guile/gtk-2.0/gtk.scm://
// 147: 0* [apply #<procedure #f args> ()]//
//In unknown file://
// ?: 1 [#<procedure #f args>]//
//In /Applications/ccp4-7.0/share/coot/scheme/coot-gui.scm://
// 750: 2* (let* ((active-mol-no #)) (if (not #) (begin #) (begin #)))//
// 754: 3 (if (not #) (begin #) (begin #))//
//In /Applications/ccp4-7.0/share/coot/scheme/refmac.scm://
// ...//
// 514: 4 (let* (# # # ...) (write-pdb-file imol pdb-in) ...)//
// 525: 5* [run-refmac-by-filename
"coot-refmac/refmac-for-phases.pdb" ...]//
//In unknown file://
// ?: 6 (letrec # # # ...)//
//In /Applications/ccp4-7.0/share/coot/scheme/refmac.scm://
// ...//
// 241: 7 (let* (#) (local-format #t "INFO:: test-refmac-status:
~s~%" ...) ...)//
// 241: 8* [goosh-command "refmac5" () ...]//
//In /Applications/ccp4-7.0/share/coot/scheme/coot-utils.scm://
// 676: 9 (if (not #) (begin # 255) (let* # # #))//
//In unknown file://
// ...//
// ?: 10 [call-with-output-file
"refmac-from-coot-refmac-for-phases-0.log" ...]//
// ?: 11 (let* ((file #) (ans #)) (close-output-port file) ans)//
// ?: 12* [open-output-file
"refmac-from-coot-refmac-for-phases-0.log"]//
// ?: 13 [open-file "refmac-from-coot-refmac-for-phases-0.log" "w"]//
/
/
I think that this is the pertinent text:
/
///<unnamed port>: In procedure open-file in expression (open-file str
OPEN_WRITE)://
//<unnamed port>: Permission denied:
"refmac-from-coot-refmac-for-phases-0.log"/
You can't write to the directory in which you are running coot.
Coot could handle this problem more elegantly - thanks for letting me know.
Paul.
