Hello, cudaSV needs bgziptabix to be happy, which is how I became aware fo all the scripts in
Med/libvcflib$ ls scripts/ bed2region plotXPEHH.R vcfindelproximity vcfnulldotslashdot vcfregionreduce_and_cut bgziptabix vcf2bed.py vcfindels vcfplotaltdiscrepancy.r vcfregionreduce_pipe plotBfst.R vcf2sqlite.py vcfjoincalls vcfplotaltdiscrepancy.sh vcfregionreduce_uncompressed plotHaplotypes.R vcfbiallelic vcfmultiallelic vcfplotsitediscrepancy.r vcfremovenonATGC plotHapLrt.R vcfclearid vcfmultiway vcfplottstv.sh vcfsnps plotPfst.R vcfclearinfo vcfmultiwayscripts vcfprintaltdiscrepancy.r vcfsort plot_roc.r vcfcomplex vcfnobiallelicsnps vcfprintaltdiscrepancy.sh vcf_strip_extra_headers plotSmoothed.R vcffirstheader vcfnoindels vcfqualfilter vcfvarstats plotWCfst.R vcfgtcompare.sh vcfnosnps vcfregionreduce Med/libvcflib$ du -sh scripts/ 399K scripts/ being plain missing in libvcflib1 . Should there be a libvcflib-bin package? These scripts are expected to install together with vcflib, so maybe having them recommended is a good idea? The vcftools package is something independent. debian/rules removes *.R files, so someone on this list knows more about it all than me, please give some directions. Best, Steffen