After a look at the CMakeLists.txt file, I very much get the impression that the current vcflib package also misses the BINs, not ony the SCRIPTs.
Best, Steffen Am 23.05.21 um 17:02 schrieb Pjotr Prins: > The vcflib installer drops the R scripts > > https://github.com/vcflib/vcflib/blob/master/CMakeLists.txt#L189 > > not sure you'd want those? > > Pj. > > On Sun, May 23, 2021 at 03:47:02PM +0200, Michael R. Crusoe wrote: >> Thanks for catching this, Steffen! >> A bug report would be appreciated, so we don't lose track of this. >> -- >> Michael R. Crusoe >> >> On Sun, May 23, 2021, 14:51 Steffen Möller <[1]steffen_moel...@gmx.de> >> wrote: >> >> Hello, >> cudaSV needs bgziptabix to be happy, which is how I became aware fo >> all >> the scripts in >> Med/libvcflib$ ls scripts/ >> bed2region plotXPEHH.R vcfindelproximity >> vcfnulldotslashdot vcfregionreduce_and_cut >> bgziptabix vcf2bed.py vcfindels >> vcfplotaltdiscrepancy.r vcfregionreduce_pipe >> plotBfst.R vcf2sqlite.py vcfjoincalls >> vcfplotaltdiscrepancy.sh vcfregionreduce_uncompressed >> plotHaplotypes.R vcfbiallelic vcfmultiallelic >> vcfplotsitediscrepancy.r vcfremovenonATGC >> plotHapLrt.R vcfclearid vcfmultiway >> vcfplottstv.sh vcfsnps >> plotPfst.R vcfclearinfo vcfmultiwayscripts >> vcfprintaltdiscrepancy.r vcfsort >> plot_roc.r vcfcomplex vcfnobiallelicsnps >> vcfprintaltdiscrepancy.sh vcf_strip_extra_headers >> plotSmoothed.R vcffirstheader vcfnoindels >> vcfqualfilter vcfvarstats >> plotWCfst.R vcfgtcompare.sh vcfnosnps >> vcfregionreduce >> Med/libvcflib$ du -sh scripts/ >> 399K scripts/ >> being plain missing in libvcflib1 . Should there be a libvcflib-bin >> package? These scripts are expected to install together with vcflib, >> so >> maybe having them recommended is a good idea? The vcftools package >> is >> something independent. >> debian/rules removes *.R files, so someone on this list knows more >> about >> it all than me, please give some directions. >> Best, >> Steffen >> >> References >> >> 1. mailto:steffen_moel...@gmx.de