Hi all, EMMAX is (was) important https://genome.sph.umich.edu/wiki/EMMAX
but I admittedly cannot invest into maintaining this or atlas. My suggestion would be to talk back to upstream about transitioning to an alternative. I have no idea about how difficult this would be to patch ourselves. Best, Steffen > Gesendet: Montag, 10. Juli 2023 um 22:01 Uhr > Von: "Andreas Tille" <andr...@an3as.eu> > An: debian-science@lists.debian.org > Betreff: Re: Removing ATLAS? > > Hi Sébastian, > > Am Sat, Jul 08, 2023 at 10:01:15AM +0200 schrieb Sébastien Villemot: > > > > So, given all that, I’m inclined to (try to) remove atlas during the > > trixie development cycle. > > Sounds reasonable. > > > Any thought on this? > > I've checked my responsibility for the dependencies and stumbled about > emmax > > > emmax.c:10:10: fatal error: clapack.h: No such file or directory > 10 | #include <clapack.h> > | ^~~~~~~~~~~ > compilation terminated. > > > and noticed > > $ apt-file search clapack.h > libatlas-base-dev: /usr/include/x86_64-linux-gnu/clapack.h > ... (other instances are not blas related) > > which was probably the reason why I've picked libatlas-base-dev > originally. I would not say that emmax is important and its > also a not maintained upstream any more. However, I vaguely > remember that this > #include <clapack.h> > in some code pieces of Debian Med was the reason to actually > pick this blas implementation. Any hint how to deal with such > cases? > > Kind regards > Andreas. > > > Checking reverse dependencies... > > # Broken Depends: > > ceres-solver: libceres-dev > > libceres3 > > colmap: colmap [amd64 arm64 i386 mips64el mipsel ppc64el s390x] > > dune-common: libdune-common-dev > > emmax: emmax > > ergo: ergo > > iml: libiml0 > > nipy: python3-nipy-lib [armel mipsel] > > psfex: psfex > > python-escript: python3-escript [armel mipsel] > > python3-escript-mpi [armel mipsel] > > qm-dsp: libqm-dsp0 > > scamp: scamp [amd64 arm64 mips64el ppc64el s390x] > > scikit-misc: python3-skmisc > > sight: libsight [amd64] > > source-extractor: source-extractor > > xmds2: xmds2 > > > > # Broken Build-Depends: > > ceres-solver: libatlas-base-dev > > dune-common: libatlas-base-dev > > emmax: libatlas-base-dev > > libatlas3-base > > ergo: libatlas-base-dev > > ghmm: libatlas-base-dev > > halide: libatlas-base-dev > > hpcc: libatlas-base-dev > > iml: libatlas-base-dev > > ncl: libatlas3-base > > odin: libatlas-base-dev > > opm-material: libatlas-base-dev > > phast: libatlas-base-dev > > plink1.9: libatlas-base-dev > > plink2: libatlas-base-dev > > psfex: libatlas-base-dev > > qm-dsp: libatlas-base-dev > > scamp: libatlas-base-dev > > scikit-misc: libatlas-base-dev > > source-extractor: libatlas-base-dev > > theli: libatlas-base-dev > > xmds2: libatlas-base-dev > > > > Dependency problem found. > > > > > > > -- > http://fam-tille.de > >
