I've discussed this off-list a little bit with JFM and am posting here
for others to reference and possibly help solve.

I'm happy to help test any proposed solution. Here's the error:

ATLAS install complete.  Examine
ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
make clean
rm -f *.o x* config?.out *core*
rm: xarchinfo_freebsd.dSYM: is a directory
rm: xarchinfo_x86.dSYM: is a directory
rm: xconfig.dSYM: is a directory
rm: xprobe_3dnow.dSYM: is a directory
rm: xprobe_gas_x8632.dSYM: is a directory
rm: xprobe_sse1.dSYM: is a directory
rm: xprobe_sse2.dSYM: is a directory
rm: xprobe_sse3.dSYM: is a directory
rm: xspew.dSYM: is a directory
make[1]: *** [clean] Error 1
make: *** [build] Error 2
### execution of /var/tmp/tmp.2.DPr4x4 failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-atlas-3.8.0-4
(Reading database ... 106456 files and directories currently installed.)
Removing fink-buildlock-atlas-3.8.0-4 ...
Failed: phase compiling: atlas-3.8.0-4 failed

Here are details about my system as well as a list of the
above-referenced files:

* My operating system:
ProductName:    Mac OS X
ProductVersion:    10.5
BuildVersion:    9A581

* My architecture:
i386

* My gcc version:
i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5465)

* My fink version:
Package manager version: 0.27.9
Distribution version: 0.8.1.rsync i386

bash-3.2$ pwd; fgrep -rI dSYM *; echo; find . -name "*.dSYM"
/sw/src/fink.build/atlas-3.8.0-4
bld/xarchinfo_freebsd.dSYM/Contents/Info.plist:
<string>dSYM</string>
bld/xarchinfo_freebsd.dSYM/Contents/Info.plist:
<key>dSYM_UUID</key>
bld/xarchinfo_x86.dSYM/Contents/Info.plist:        <string>dSYM</string>
bld/xarchinfo_x86.dSYM/Contents/Info.plist:        <key>dSYM_UUID</key>
bld/xconfig.dSYM/Contents/Info.plist:        <string>dSYM</string>
bld/xconfig.dSYM/Contents/Info.plist:        <key>dSYM_UUID</key>
bld/xprobe_3dnow.dSYM/Contents/Info.plist:        <string>dSYM</string>
bld/xprobe_3dnow.dSYM/Contents/Info.plist:        <key>dSYM_UUID</key>
bld/xprobe_gas_x8632.dSYM/Contents/Info.plist:
<string>dSYM</string>
bld/xprobe_gas_x8632.dSYM/Contents/Info.plist:        <key>dSYM_UUID</key>
bld/xprobe_sse1.dSYM/Contents/Info.plist:        <string>dSYM</string>
bld/xprobe_sse1.dSYM/Contents/Info.plist:        <key>dSYM_UUID</key>
bld/xprobe_sse2.dSYM/Contents/Info.plist:        <string>dSYM</string>
bld/xprobe_sse2.dSYM/Contents/Info.plist:        <key>dSYM_UUID</key>
bld/xprobe_sse3.dSYM/Contents/Info.plist:        <string>dSYM</string>
bld/xprobe_sse3.dSYM/Contents/Info.plist:        <key>dSYM_UUID</key>
bld/xspew.dSYM/Contents/Info.plist:        <string>dSYM</string>
bld/xspew.dSYM/Contents/Info.plist:        <key>dSYM_UUID</key>

./bld/xarchinfo_freebsd.dSYM
./bld/xarchinfo_x86.dSYM
./bld/xconfig.dSYM
./bld/xprobe_3dnow.dSYM
./bld/xprobe_gas_x8632.dSYM
./bld/xprobe_sse1.dSYM
./bld/xprobe_sse2.dSYM
./bld/xprobe_sse3.dSYM
./bld/xspew.dSYM
bash-3.2$


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