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On 12/6/11 6:13 AM, Frank Eisenmenger wrote:
> Could anyone, please, give an advice how to overcome the error with
> the atlas-package, and to proceed to update the other (hopefully
> well configured) packages via "fink update-all" ?
>
> I am tired to cycle through "fink selfupdate & fink update-all"
> over and over, and always to get stuck with the buggy
> atlas-installation procedure, again.
Presumably none of the packages involved in your cycle has changed, so
you _should_ be getting the same results over and over.
>
> With best regards,
>
> Frank
>
> The following error makes the compilation of atlas-3.9.11-12 stop:
>
> ... gcc -DL2SIZE=4194304
> -I/sw64/src/fink.build/atlas-3.9.11-12/bld/include
> -I/sw64/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include
> -I/sw64/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include/contrib
>
>
- -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Core2
> -DATL_CPUMHZ=1600 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS
> -DATL_GAS_x8664 -DATL_AVgcc -DATL_FULL_LAPACK -DATL_NCPU=2 -fPIC
> -O3 -fomit-frame-pointer -m64 -o xcmv cgemvtune.o \ ATL_cgemv.o
> ATL_cgemvN_b0.o ATL_cgemvT_b0.o ATL_cgemvN_b1.o ATL_cgemvT_b1.o
> ATL_cgemvN_bXi0.o ATL_cgemvT_bXi0.o ATL_cgemvN_bX.o
> ATL_cgemvT_bX.o
> /sw64/src/fink.build/atlas-3.9.11-12/bld/lib/libtstatlas.a
> /sw64/src/fink.build/atlas-3.9.11-12/bld/lib/libatlas.a
> /sw64/src/fink.build/atlas-3.9.11-12/bld/bin/ATLrun.sh
> /sw64/src/fink.build/atlas-3.9.11-12/bld/tune/blas/gemv xcmv -C
> 5000 -l 96 -A N \ -m 1000 -n 1000 -f 16 -o res/cgemvN_5000_96
> res/cgemvN_5000_96 : 3018.458382 MFLOPS res/cgemvN_5000_96 :
> 2053.873802 MFLOPS res/cgemvN_5000_96 : 3937.356220 MFLOPS
> res/cgemvN_5000_96 : 3003.23 MFLOPS
>
> res/cgemvN_5000_96 : VARIATION EXCEEDS TOLERENCE, RERUN WITH HIGHER
> REPS.
>
> make[3]: *** [res/cMVRES] Error 255 make[2]: ***
> [/sw64/src/fink.build/atlas-3.9.11-12/bld/tune/blas/gemv/res/cMVRES]
> Error 2 ERROR 874 DURING MVTUNE!!. CHECK INSTALL_LOG/cMVTUNE.LOG
> FOR DETAILS. cd /sw64/src/fink.build/atlas-3.9.11-12/bld ; make
> error_report make -f Make.top error_report uname -a 2>&1 >>
> bin/INSTALL_LOG/ERROR.LOG gcc -v 2>&1 >>
> bin/INSTALL_LOG/ERROR.LOG Using built-in specs. COLLECT_GCC=gcc
> COLLECT_LTO_WRAPPER=/sw64/lib/gcc4.6/libexec/gcc/x86_64-apple-darwin10.8.0/4.6.2/lto-wrapper
>
>
Target: x86_64-apple-darwin10.8.0
> Configured with: ../gcc-4.6.2/configure --prefix=/sw64
> --prefix=/sw64/lib/gcc4.6 --mandir=/sw64/share/man
> --infodir=/sw64/lib/gcc4.6/info
> --enable-languages=c,c++,fortran,lto,objc,obj-c++,java
> --with-gmp=/sw64 --with-libiconv-prefix=/sw64 --with-ppl=/sw64
> --with-cloog=/sw64 --with-mpc=/sw64 --with-system-zlib
> --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
> --program-suffix=-fsf-4.6 --enable-cloog-backend=isl Thread model:
> posix gcc version 4.6.2 (GCC) gcc -V 2>&1 >>
> bin/INSTALL_LOG/ERROR.LOG gcc: error: unrecognized option '-V' gcc:
> fatal error: no input files compilation terminated. make[4]:
> [error_report] Error 1 (ignored) gcc --version 2>&1 >>
> bin/INSTALL_LOG/ERROR.LOG tar cf error_Core264SSE3.tar Make.inc
> bin/INSTALL_LOG/* gzip --best error_Core264SSE3.tar mv
> error_Core264SSE3.tar.gz error_Core264SSE3.tgz Error report
> error_<ARCH>.tgz has been created in your top-level ATLAS
> directory. Be sure to include this file in any help request. cat:
> ../../CONFIG/error.txt: No such file or directory cat:
> ../../CONFIG/error.txt: No such file or directory make[1]: ***
> [build] Error 255 make: *** [build] Error 2 ### execution of
> /var/tmp/tmp.2.uZG06Z failed, exit code 2 Removing runtime
> build-lock... Removing build-lock package...
> /sw64/bin/dpkg-lockwait -r fink-buildlock-atlas-3.9.11-12 (Reading
> database ... 106614 files and directories currently installed.)
> Removing fink-buildlock-atlas-3.9.11-12 ... Failed: phase
> compiling: atlas-3.9.11-12 failed
>
> ...
>
> Also include the following system information: Package manager
> version: 0.31.5 Distribution version: selfupdate-rsync Tue Dec 6
> 11:19:38 2011, 10.6, x86_64 Trees: local/main stable/main
> stable/crypto unstable/main unstable/crypto Xcode: 3.2.6
>
>
atlas can be a bit of a pain to deal with.
This version of atlas is a bit old, because it's in an unstable
series, which we normally have been trying to avoid, and we've been
waiting for a stable 3.10 branch to come out to do an update. Since
atlas tries to do cpu-based tuning, it often seems to difficulty on
hardware which is a lot newer than the package. This version builds
OK on my machines, but my newest is 3 years old (and had problems with
an older Fink atlas when I first got it).
Do you currently have a version of atlas installed? ("fink list -i
atlas"). The build really hasn't changed substantially for the
updates in that past couple of months, so I would think that you
_should_ be able to do this update.
Since the error looks like it is from a load test, perhaps reducing
the number of applications you have open while you do the build will
allow you to work around this.
- --
Alexander Hansen, Ph.D.
Fink User Liaison
http://finkakh.wordpress.com/
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