Hi Alexander,
the update of atlas was the only application running at that time.
I had a version of atlas which 'fink' offered to update (i.e. after the
command: fink update-all).
In order to avoid atlas' "failure" to compile (and blocking all following
updates), I had to remove my current atlas-packages.
Hopefully, the next atlas version does not contain this stupid "your machine's
to fast/slow, so I am exiting from set-up" feature.
Regards,
Frank
>________________________________
> Von: Alexander Hansen <[email protected]>
>An: Frank Eisenmenger <[email protected]>
>Cc: "[email protected]" <[email protected]>
>Gesendet: 16:27 Dienstag, 6.Dezember 2011
>Betreff: Re: [Fink-users] Failed: phase compiling: atlas-3.9.11-12
>
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>Hash: SHA1
>
>On 12/6/11 6:13 AM, Frank Eisenmenger wrote:
>> Could anyone, please, give an advice how to overcome the error with
>> the atlas-package, and to proceed to update the other (hopefully
>> well configured) packages via "fink update-all" ?
>>
>> I am tired to cycle through "fink selfupdate & fink update-all"
>> over and over, and always to get stuck with the buggy
>> atlas-installation procedure, again.
>
>Presumably none of the packages involved in your cycle has changed, so
>you _should_ be getting the same results over and over.
>
>>
>> With best regards,
>>
>> Frank
>>
>> The following error makes the compilation of atlas-3.9.11-12 stop:
>>
>> ... gcc -DL2SIZE=4194304
>> -I/sw64/src/fink.build/atlas-3.9.11-12/bld/include
>> -I/sw64/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include
>> -I/sw64/src/fink.build/atlas-3.9.11-12/bld/../ATLAS//include/contrib
>>
>>
>- -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Core2
>> -DATL_CPUMHZ=1600 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS
>> -DATL_GAS_x8664 -DATL_AVgcc -DATL_FULL_LAPACK -DATL_NCPU=2 -fPIC
>> -O3 -fomit-frame-pointer -m64 -o xcmv cgemvtune.o \ ATL_cgemv.o
>> ATL_cgemvN_b0.o ATL_cgemvT_b0.o ATL_cgemvN_b1.o ATL_cgemvT_b1.o
>> ATL_cgemvN_bXi0.o ATL_cgemvT_bXi0.o ATL_cgemvN_bX.o
>> ATL_cgemvT_bX.o
>> /sw64/src/fink.build/atlas-3.9.11-12/bld/lib/libtstatlas.a
>> /sw64/src/fink.build/atlas-3.9.11-12/bld/lib/libatlas.a
>> /sw64/src/fink.build/atlas-3.9.11-12/bld/bin/ATLrun.sh
>> /sw64/src/fink.build/atlas-3.9.11-12/bld/tune/blas/gemv xcmv -C
>> 5000 -l 96 -A N \ -m 1000 -n 1000 -f 16 -o res/cgemvN_5000_96
>> res/cgemvN_5000_96 : 3018.458382 MFLOPS res/cgemvN_5000_96 :
>> 2053.873802 MFLOPS res/cgemvN_5000_96 : 3937.356220 MFLOPS
>> res/cgemvN_5000_96 : 3003.23 MFLOPS
>>
>> res/cgemvN_5000_96 : VARIATION EXCEEDS TOLERENCE, RERUN WITH HIGHER
>> REPS.
>>
>> make[3]: *** [res/cMVRES] Error 255 make[2]: ***
>> [/sw64/src/fink.build/atlas-3.9.11-12/bld/tune/blas/gemv/res/cMVRES]
>> Error 2 ERROR 874 DURING MVTUNE!!. CHECK INSTALL_LOG/cMVTUNE.LOG
>> FOR DETAILS. cd /sw64/src/fink.build/atlas-3.9.11-12/bld ; make
>> error_report make -f Make.top error_report uname -a 2>&1 >>
>> bin/INSTALL_LOG/ERROR.LOG gcc -v 2>&1 >>
>> bin/INSTALL_LOG/ERROR.LOG Using built-in specs. COLLECT_GCC=gcc
>> COLLECT_LTO_WRAPPER=/sw64/lib/gcc4.6/libexec/gcc/x86_64-apple-darwin10.8.0/4.6.2/lto-wrapper
>>
>>
>Target: x86_64-apple-darwin10.8.0
>> Configured with: ../gcc-4.6.2/configure --prefix=/sw64
>> --prefix=/sw64/lib/gcc4.6 --mandir=/sw64/share/man
>> --infodir=/sw64/lib/gcc4.6/info
>> --enable-languages=c,c++,fortran,lto,objc,obj-c++,java
>> --with-gmp=/sw64 --with-libiconv-prefix=/sw64 --with-ppl=/sw64
>> --with-cloog=/sw64 --with-mpc=/sw64 --with-system-zlib
>> --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib
>> --program-suffix=-fsf-4.6 --enable-cloog-backend=isl Thread model:
>> posix gcc version 4.6.2 (GCC) gcc -V 2>&1 >>
>> bin/INSTALL_LOG/ERROR.LOG gcc: error: unrecognized option '-V' gcc:
>> fatal error: no input files compilation terminated. make[4]:
>> [error_report] Error 1 (ignored) gcc --version 2>&1 >>
>> bin/INSTALL_LOG/ERROR.LOG tar cf error_Core264SSE3.tar Make.inc
>> bin/INSTALL_LOG/* gzip --best error_Core264SSE3.tar mv
>> error_Core264SSE3.tar.gz error_Core264SSE3.tgz Error report
>> error_<ARCH>.tgz has been created in your top-level ATLAS
>> directory. Be sure to include this file in any help request. cat:
>> ../../CONFIG/error.txt: No such file or directory cat:
>> ../../CONFIG/error.txt: No such file or directory make[1]: ***
>> [build] Error 255 make: *** [build] Error 2 ### execution of
>> /var/tmp/tmp.2.uZG06Z failed, exit code 2 Removing runtime
>> build-lock... Removing build-lock package...
>> /sw64/bin/dpkg-lockwait -r fink-buildlock-atlas-3.9.11-12 (Reading
>> database ... 106614 files and directories currently installed.)
>> Removing fink-buildlock-atlas-3.9.11-12 ... Failed: phase
>> compiling: atlas-3.9.11-12 failed
>>
>> ...
>>
>> Also include the following system information: Package manager
>> version: 0.31.5 Distribution version: selfupdate-rsync Tue Dec 6
>> 11:19:38 2011, 10.6, x86_64 Trees: local/main stable/main
>> stable/crypto unstable/main unstable/crypto Xcode: 3.2.6
>>
>>
>
>atlas can be a bit of a pain to deal with.
>
>This version of atlas is a bit old, because it's in an unstable
>series, which we normally have been trying to avoid, and we've been
>waiting for a stable 3.10 branch to come out to do an update. Since
>atlas tries to do cpu-based tuning, it often seems to difficulty on
>hardware which is a lot newer than the package. This version builds
>OK on my machines, but my newest is 3 years old (and had problems with
>an older Fink atlas when I first got it).
>
>Do you currently have a version of atlas installed? ("fink list -i
>atlas"). The build really hasn't changed substantially for the
>updates in that past couple of months, so I would think that you
>_should_ be able to do this update.
>
>Since the error looks like it is from a load test, perhaps reducing
>the number of applications you have open while you do the build will
>allow you to work around this.
>- --
>Alexander Hansen, Ph.D.
>Fink User Liaison
>http://finkakh.wordpress.com/
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