I'll leave the first question for Martin but it looks right to me
(except for the typo in what should be "-autorecon3"). For the second one I
think you want to rerun the mri_segstats and mris_anatomical_stats
commands, which should be done by autorecon3
cheers
Bruce
On Mon, 20 Apr 2015, prasser wrote:
Dear All,
I wanted to check that corrections to a Long pial surface through edits
to brainmask.mgz and brain.finalsurfs.manedit.mgz are followed by the
command:
recon-all -long tpN1 templateID -autorecon2-pial -autorecom3
Is this correct?
Also, after editing the Long aseg.mgz to correct the volume of structures
what command should be run to have these edits update the dependent files?
Thanks,
P
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