Hi all, I'm a fairly new user of Freesurfer, although I have been a user of AFNI for some time. I have a question related to using MNI space in freesurfer. Currently we have been normalizing our data to the MNI_avg_152 template, using FLIRT in FSL. I understand that Freesurfer can be set up to use MNI tools for this process, which is implemented during the cortical reconstruction stream. Is there any reason why we wouldn't be able to use MNI normalized data as our "raw data" before running mri_convert? Will converting raw data to COR format remove this data from MNI space, and put it into a new space? Or, is there a particular reason why MNI normalization occurs midstream in the freesurfer process?
Thanks, Tim Souza ---------------------- Timothy Souza Brown University Department of Neuroscience [EMAIL PROTECTED] ph: 401-863-1258 fax: 401-863-1074 ------------------------
