Dear Sir, When I am trying with -skip in do_dssp according to your suggestion it is giving an error messege "Invalid command line argument: -skip " , It is not even mentioned in the manual, and When I am trying with -bx or -by whathever value I give the graph little changes, sometimes it becomes unreadable too.How can I solve it?
regards Sangeeta --- Berk Hess <[EMAIL PROTECTED]> wrote: > > > > >From: David van der Spoel <[EMAIL PROTECTED]> > >Reply-To: Discussion list for GROMACS users > <gmx-users@gromacs.org> > >To: Discussion list for GROMACS users > <gmx-users@gromacs.org> > >Subject: Re: [gmx-users] query about .xpm file > >Date: Thu, 22 Feb 2007 11:28:16 +0100 > > > >sangeeta kundu wrote: > >>Dear Sir, > >> > >> I converted the output of do_dssp program > (.xpm > >>file) into an .eps file by the command xpm2ps,I > also > >>specified the size by -size command, but the > problem > >>is that when I am observing the trajectory for > >>10-200ps the output looks fine , but as I increase > the > >>time scale from 100ps to 1/2 - 8/10 ns I am > observing > >>only a line, I mean to say as I increase the X > axis, > >>the Y axis is being quenched, so it is not anyway > >>producing the correct data type,I can not > understand > >>how to get rid of this problem , How can I > visualise > >>the .xpm file, How can I convert it successfully > into > >>a postscript file, so that every residue and the > time > >>scale will be clearly visible, PLease help. > >> > >specify an m2p input file where you set the y-size > larger. alternatively > >use -skip in do_dssp to get fewer point on the x > axis. > > I think specifying different -bx and -by values with > xpm2ps > will solve your problem. > > Berk. > > _________________________________________________________________ > Play online games with your friends with Messenger > http://www.join.msn.com/messenger/overview > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the > list. Use the > www interface or send it to > [EMAIL PROTECTED] > Can't post? Read > http://www.gromacs.org/mailing_lists/users.php > __________________________________________________________ Yahoo! India Answers: Share what you know. Learn something new http://in.answers.yahoo.com/ _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php