Hello, I am simulating a trimer in a membrane. In one of my simulation two of the monomers are on one side of the box and the other monomer is on the other side of the box. I tried using trjconv to center the whole thing in the center of my simulation cell but have failed miserably. I also searched around for about an hour and could not find anything.
I use trjconv -f *.gro -s *.tpr -center rect -pbc whole -o *.gro. Any advice? Thanks, Ilya -- Ilya Chorny Ph.D.
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